View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_high_46 (Length: 243)
Name: NF5911_high_46
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55456272 - 55456510
Alignment:
| Q |
1 |
tgtagctcttagtctttttgcctgatatatttggcaatggattcaataactttagtgcatgcatgtactatataaaaatgattgaaatggatatggagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456272 |
tgtagctcttagtctttttgcctgatatttttggcaatggattcaataactttagtgcatgcatgtactatataaaaatgattgaaatggatatggagat |
55456371 |
T |
|
| Q |
101 |
gaacctgggaaggggttgtgtgaacagagaagccattaattatgtgtttataactgtggagtttattgtaacttccattctccaaagtgctttgtagaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55456372 |
gaacctgggaaggggttgtgtgaacagagaagccattaattatgtgtttataactgtggagtttattataacttccattctccaaagtgctttgtagaag |
55456471 |
T |
|
| Q |
201 |
catatcatgagacgccaataagtatttttcatgtgcctt |
239 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55456472 |
catgtcatgagacgctaataagtatttttcatgtgcctt |
55456510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University