View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_48 (Length: 239)
Name: NF5911_high_48
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 55456015 - 55456238
Alignment:
| Q |
16 |
caagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaagtgaaaggttggtaagcaaagcttggatgaattggat |
115 |
Q |
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| T |
55456015 |
caagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaagtgaaaggttggtaagcaaagcttggatgaattggat |
55456114 |
T |
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| Q |
116 |
taatgccactatcaacaataccaataacaattccatcacctgcatttttgtcacctccttcttgtgcccataatccttttggtaagttaagaaagtcagg |
215 |
Q |
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| T |
55456115 |
taatgccactatcaacaataccaataacaattccatcacctgcatttttgtcacctcctacttgtgcccataatccttttggcaagttaagaaaatcagg |
55456214 |
T |
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| Q |
216 |
agtgtatgttgtcatcagtttcac |
239 |
Q |
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| T |
55456215 |
agtgtatgttgtcatcagtttcac |
55456238 |
T |
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