View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_49 (Length: 238)
Name: NF5911_high_49
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_49 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20054705 - 20054938
Alignment:
| Q |
1 |
caaaacggcaaaccaaacacactgcccaaaatatatggtttcttctatattgaagttgaattttggaatcagtggaacagatgatt--ctcctggaacgg |
98 |
Q |
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| T |
20054705 |
caaaacggcaaaccaaacacactgcccaaaatatatggtttcttctatattgaagttgaattttggaatcaatggaacagatgatctcctcctagaacag |
20054804 |
T |
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| Q |
99 |
atgatctcctcct----------atggtttcttctattcatgagctgttatgaaacagtttgattctcgaaactttacacagcggtagatctaatgattg |
188 |
Q |
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| T |
20054805 |
atgatatcctcctgtgaacatgtatggtttcttctattcatgagctgttatgaaacagtttgattctcgaaactttacacaacggtagatctaatgattg |
20054904 |
T |
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| Q |
189 |
atgtggctgttacagtagtaatgctatacaaata |
222 |
Q |
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| T |
20054905 |
atgtggctgttacagtagtaatgctatacaaata |
20054938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 19249483 - 19249404
Alignment:
| Q |
136 |
ttatgaaacagtttgattctcgaaactttacacagcggtagatctaatgattgatgtggctgttacagtagtaatgctat |
215 |
Q |
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| T |
19249483 |
ttatgaaacagtttgattcttgacactttgcacaatggtatatctaatgattgatgtggttgttgcaacagtaatgctat |
19249404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 6269 - 6359
Alignment:
| Q |
111 |
tatggtttcttctattcatgagctgttatgaaacagtttgattctcgaaactttacacagcggtagatctaatgattgatgtggctgttac |
201 |
Q |
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| T |
6269 |
tatggtttcttctattaatgagctgttatgaaacagtttgattctcgaaactttacacaatggtagatctaatgattgatgtggctgttac |
6359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 15782993 - 15783027
Alignment:
| Q |
61 |
ttttggaatcagtggaacagatgattctcctggaa |
95 |
Q |
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| T |
15782993 |
ttttggaatcagtggaacagatgatcctcctggaa |
15783027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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