View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_51 (Length: 230)
Name: NF5911_high_51
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 37002668 - 37002526
Alignment:
| Q |
7 |
gatgaagtttataagtatgtagtcatgggacc-agaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagtttaaag |
105 |
Q |
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| T |
37002668 |
gatgaagtttataagtatgtagtcatgggacctagaaaatgacgaattgtgtgattaagttatgattttcctaatggatttcaacttg-taagttttaag |
37002570 |
T |
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| Q |
106 |
aatatatgttgggaagctaaatattagctataagaatatctaag |
149 |
Q |
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| T |
37002569 |
aatatatgttggcaagctaaatattagatataagaaaatctaag |
37002526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 36992749 - 36992609
Alignment:
| Q |
1 |
aattgtgatgaagtttataagtatgtagtcatgggaccagaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagtt |
100 |
Q |
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| T |
36992749 |
aattgtgatgaagtttataagtatgtag-cata-------aaaatgatgaattgtgtgattaagctatgattttcctaaaggattaaaacttg-taagtt |
36992659 |
T |
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| Q |
101 |
taaagaatatatgttgggaagctaaatattagctataagaatatctaagg |
150 |
Q |
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| T |
36992658 |
taaaggatatatgttggcaagctaaatattagatataagaaaatctaagg |
36992609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 37002510 - 37002459
Alignment:
| Q |
160 |
tatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatca |
211 |
Q |
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| T |
37002510 |
tatgtgcatatcatgatgtacatgtcagagtaaaacagaagggaatttatca |
37002459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 26647615 - 26647559
Alignment:
| Q |
159 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
215 |
Q |
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| T |
26647615 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
26647559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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