View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_8 (Length: 474)
Name: NF5911_high_8
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 42495583 - 42495341
Alignment:
| Q |
17 |
cactattgacatcaagtagcctttgatggcagcaaagacaaacaaatatctgacgatgctaagtttggccaccggagaaaaggcatcattacttgaggat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42495583 |
cactattgacatcaagtagcctttgatggcagcaaagacagacaaatttctgacgatgctaagtttggccaccggagaaaaggcatcattacttgaggat |
42495484 |
T |
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| Q |
117 |
agattacatacatcaagtagcctctaactgggtttgtttctgattctatttgattgcattacaggggggctgaaatgaaggttcactttataaaatgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42495483 |
agattacatacatcaagtagcctctaactgggtttgtttctgattctatttgattgcattacagggggcctgaaatgaaggttcactttataaaatgctt |
42495384 |
T |
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| Q |
217 |
agagaagcctaggaaagtaggtgaaaatgataggtcattctaa |
259 |
Q |
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| T |
42495383 |
agagaagcctaggaaagtaggtgaaaatgataagtcattctaa |
42495341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 349 - 466
Target Start/End: Complemental strand, 42495346 - 42495229
Alignment:
| Q |
349 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42495346 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
42495247 |
T |
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| Q |
449 |
tttaaagattagtataat |
466 |
Q |
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|||||||||||||||||| |
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| T |
42495246 |
tttaaagattagtataat |
42495229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 257 - 454
Target Start/End: Complemental strand, 42493217 - 42493015
Alignment:
| Q |
257 |
taatctatacctaacatcttgactcaatttcttggggactgataaaaaatcgagttggactttagaaggcgtgtttgatcctgaaacatggcttctaaag |
356 |
Q |
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||||| ||||||||||||||||||||||||||| || |||||||||||| || ||||||||| ||||||||||||| ||| ||||| | ||||||||||| |
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| T |
42493217 |
taatccatacctaacatcttgactcaatttcttaggaactgataaaaaaacgtgttggacttgagaaggcgtgtttcatcttgaaagacggcttctaaag |
42493118 |
T |
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| Q |
357 |
gcacatacatgtataaatgatcataattatatttcaagataa-----aaaatga-ttccaaagtctaacacattttttgatcagcccccaaaattttatt |
450 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||| || |||||||||||||||||| |
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| T |
42493117 |
gcacatacatgtataaatgattataattatatttcaagaaaagatgaaaaatgacttccaaagtctaacgcatttttt-attagcccccaaaattttatt |
42493019 |
T |
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| Q |
451 |
taaa |
454 |
Q |
| |
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|||| |
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| T |
42493018 |
taaa |
42493015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 42493405 - 42493280
Alignment:
| Q |
20 |
tattgacatcaagtagcctttgatggcagcaaagacaaacaaatatctgacgatgctaagtttggccaccggagaaaaggcatcattacttgaggataga |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
42493405 |
tattgacatcaagtagcctttgatgccagcaaagacaaacaaatttctgacagtgctaagtttggccacaggagaaaaggcttcattacttgaggataga |
42493306 |
T |
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| Q |
120 |
ttacatacatcaagtagcctctaact |
145 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42493305 |
ttacatacatcaagtagcctctaact |
42493280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 42493281 - 42493233
Alignment:
| Q |
225 |
ctaggaaagtaggtgaaaatgataggtcattctaatctatacctaacat |
273 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42493281 |
ctagaaaagtaggtgaaaatgataggtcattctaatccatacctaacat |
42493233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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