View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_10 (Length: 464)
Name: NF5911_low_10
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 27840413 - 27839979
Alignment:
| Q |
13 |
aatatagttagacgacttaggatttattgtgataactgtcagtactgtaagaccgtttacttctctaagaataacaagtactccaattgtattaaacaca |
112 |
Q |
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| T |
27840413 |
aatatagttagacgacttaggatttattgtgataactgtcagtactgtaagaccgtttacttctctaagaataacaagtactccaattgtattaaacaca |
27840314 |
T |
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| Q |
113 |
tgaatttcaagtattagtcnnnnnnnnnnnnnnnnnnnnnnnnngtatcatttgagcatgttggcatagatttaatgcatgataacggattcgttaacaa |
212 |
Q |
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| T |
27840313 |
tgaatttcaagtattagtcaaagaaaaagtgcaaaaacaaaaaagtatcatttgagcatgttggcatagatttaatgcatgataacggattcgttaacaa |
27840214 |
T |
|
| Q |
213 |
aggttttccgtcaagacatttgttggcattatagacaagtccttacaaacaatatagtatgaattatgtatatgcattatgcttttaatgttcgtatagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27840213 |
aggttttccgtcaagacatttgttggcattatagacaagtccttacaaacaatatagtatgaattatgtatatgcattatgcttttaatgttcgtatagt |
27840114 |
T |
|
| Q |
313 |
ataatcttctgaattcaattaaagttatgtttctcctgtttttgtttgtccatattataaggtatacattattgcttaattaagtgtcatgataggaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27840113 |
ataatcttctgaattcaattaaagttatgtttctcctgttcttgtttgtccatattataaagtatacattattgcttaattaagtgtcatgataggaaat |
27840014 |
T |
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| Q |
413 |
gtctttcaaaaaagacatgaaagaagccaactata |
447 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
27840013 |
gtctttcaaaaaagacatgaaagaagccaattata |
27839979 |
T |
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