View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_low_15 (Length: 376)

Name: NF5911_low_15
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_low_15
NF5911_low_15
[»] scaffold0011 (2 HSPs)
scaffold0011 (199-359)||(12540-12700)
scaffold0011 (13-193)||(12387-12567)
[»] chr5 (9 HSPs)
chr5 (55-291)||(2190240-2190476)
chr5 (69-231)||(20419435-20419597)
chr5 (40-193)||(17066740-17066893)
chr5 (146-289)||(3039968-3040109)
chr5 (184-290)||(17066852-17066957)
chr5 (245-289)||(4114106-4114150)
chr5 (245-289)||(12741936-12741980)
chr5 (245-289)||(12804751-12804795)
chr5 (176-225)||(17854694-17854742)
[»] chr3 (15 HSPs)
chr3 (44-290)||(44798648-44798894)
chr3 (51-227)||(39926443-39926618)
chr3 (41-192)||(22754662-22754806)
chr3 (166-291)||(39926347-39926471)
chr3 (145-193)||(45004442-45004490)
chr3 (49-193)||(8004312-8004454)
chr3 (183-254)||(8004284-8004355)
chr3 (223-282)||(22754818-22754877)
chr3 (231-289)||(19234353-19234411)
chr3 (217-289)||(2811818-2811890)
chr3 (47-155)||(14264719-14264827)
chr3 (216-283)||(14464071-14464138)
chr3 (199-239)||(16252383-16252423)
chr3 (217-277)||(44798834-44798894)
chr3 (184-228)||(45004440-45004483)
[»] chr7 (11 HSPs)
chr7 (69-265)||(34328529-34328723)
chr7 (49-248)||(11561368-11561566)
chr7 (50-254)||(9384544-9384747)
chr7 (32-137)||(39643557-39643662)
chr7 (95-227)||(43466691-43466823)
chr7 (48-136)||(2627430-2627518)
chr7 (217-261)||(31589455-31589499)
chr7 (247-289)||(2914802-2914844)
chr7 (204-282)||(5899214-5899292)
chr7 (202-291)||(2377154-2377243)
chr7 (200-288)||(8727188-8727276)
[»] chr2 (6 HSPs)
chr2 (37-227)||(24582502-24582693)
chr2 (216-289)||(24582389-24582462)
chr2 (245-292)||(18206986-18207033)
chr2 (164-227)||(24582470-24582532)
chr2 (245-289)||(7269316-7269360)
chr2 (83-127)||(20147329-20147373)
[»] chr8 (2 HSPs)
chr8 (41-225)||(31271747-31271931)
chr8 (81-126)||(9512471-9512516)
[»] chr4 (6 HSPs)
chr4 (41-193)||(46844624-46844776)
chr4 (114-206)||(45682778-45682870)
chr4 (41-228)||(5314254-5314441)
chr4 (184-280)||(46844570-46844665)
chr4 (184-227)||(23811286-23811329)
chr4 (152-228)||(23811319-23811393)
[»] chr1 (9 HSPs)
chr1 (146-259)||(32306407-32306519)
chr1 (51-252)||(19062866-19063066)
chr1 (41-158)||(8360166-8360283)
chr1 (163-254)||(21258291-21258381)
chr1 (41-187)||(29694004-29694149)
chr1 (230-290)||(8360099-8360159)
chr1 (216-289)||(41515218-41515291)
chr1 (201-289)||(32306312-32306400)
chr1 (152-193)||(21258319-21258360)
[»] chr6 (5 HSPs)
chr6 (41-187)||(24624901-24625047)
chr6 (169-259)||(9863424-9863513)
chr6 (184-289)||(9875776-9875880)
chr6 (123-227)||(9863526-9863629)
chr6 (216-252)||(2183248-2183284)
[»] scaffold1107 (1 HSPs)
scaffold1107 (216-259)||(1484-1527)
[»] scaffold0781 (1 HSPs)
scaffold0781 (216-252)||(1042-1078)


Alignment Details
Target: scaffold0011 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 199 - 359
Target Start/End: Original strand, 12540 - 12700
Alignment:
Q  199 aattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattcaaaccataa 298  Q
    ||||| || ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  12540 aattagcatttgcgtgagttaactcacgcaaggatattttgggaagttcagttgggcgcgaataaaatgtgttcggggaagagcagaattcaaaccataa 12639  T
Q  299 gtcaagtggaaacgaaacttagagggattagcccgtgttatacatcctcaatacaaataaa 359  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12640 gtcaagtagaaacgaaacttagagggattagcccgtgttatacaccctcaatacaaataaa 12700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 12387 - 12567
Alignment:
Q  13 aaaatagttaaaacgataagattattgttcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacaca 112  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| ||   |  ||||| |||||| |||| ||||| |||||||||||||||| |||    
T  12387 aaaatagttaaaaccataagattattgttcttctcccaacatattttgcttttgtccaactgaaatatcgaaagtacccctacgttagttaagtaataca 12486  T
Q  113 tgtgttaaaatctgcgcatcttaacatgcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacg 193  Q
    ||||||||||||| || |||||||||||||||  ||||||||| ||  |  ||||||| || ||||||| |||||||||||    
T  12487 tgtgttaaaatctacgaatcttaacatgcgttgtgcaacttaattcatgacggaattagcatttgcgtgagttaactcacg 12567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 55 - 291
Target Start/End: Original strand, 2190240 - 2190476
Alignment:
Q  55 atttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaactta 154  Q
    ||||| ||||||| ||||| ||||||| |||||||| ||  |||||||||  ||| || || |||||||||| ||||||||||||||| | | |||||||    
T  2190240 attttgctcgcgcccaactgaaatattaaaaataccaatgtgttagttaaacaactcaagttttaaaatctgtgcatcttaacatgcgctgcacaactta 2190339  T
Q  155 actcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttggg 254  Q
    |||| || |||||||||| |||| ||  ||||||||||| |||||||||||||||   || |||||||||||||||| ||||||| ||||| ||||||||    
T  2190340 actcacgctggaattaacgcttgtgtaagttaactcacgctggaaattaacacttacatgagttaactcacgcaagggtattttgaaaagtacagttggg 2190439  T
Q  255 cgcgaacaaaatgtgttcggagaagagcataattcaa 291  Q
    ||||| |||||| ||||  ||||| ||||||||||||    
T  2190440 cgcgagcaaaatatgttgcgagaatagcataattcaa 2190476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 20419435 - 20419597
Alignment:
Q  69 caactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaacttaactcgcgttgg-aa 167  Q
    ||||| |||||| |||||||  |||| || |||||| | |  || ||||||||||||||||  |||||||||||||  |||||||||||| |||||| ||    
T  20419435 caactgaaatatcgaaaatattcatatgtgagttaactcatgcaggtgttaaaatctgcgctacttaacatgcgttgggcaacttaactcacgttggaaa 20419534  T
Q  168 ttaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaagg 231  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||||||||    
T  20419535 ttaacacttgcgtgagttaactcacgctgg-aattaacacttgcgtgagttaactcacgcaagg 20419597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 17066740 - 17066893
Alignment:
Q  40 ttcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacat 139  Q
    |||||||||||||||||||| ||||||  ||||| |||||  | |||||||||| |||||||||| |||| || |||||||||||| ||||||||| |||    
T  17066740 ttcttctctcaacatattttgctcgcgtccaactgaaataccggaaatacccatgcgttagttaattaacgcaagtgttaaaatctacgcatcttagcat 17066839  T
Q  140 gcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacg 193  Q
      | | | ||||||||||| || |||||||||||||||| || |||||||||||    
T  17066840 ctgctgcacaacttaactcacgctggaattaacacttgcatgagttaactcacg 17066893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 289
Target Start/End: Complemental strand, 3040109 - 3039968
Alignment:
Q  146 cgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagt 245  Q
    ||||||| ||||| || || ||||||  |||| ||| ||||||||||| ||| |||||||||||| ||| ||||| ||  ||| |||||||||  |||||    
T  3040109 cgcaactcaactcacgctgaaattaaatcttgtgtgagttaactcacgatgggaattaacacttgcgtgagttaaatc--gcatggatattttaaaaagt 3040012  T
Q  246 tcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    |||||||  ||||||||||||||||| | |||| ||||||||||    
T  3040011 tcagttgaacgcgaacaaaatgtgttggaagaatagcataattc 3039968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 17066852 - 17066957
Alignment:
Q  184 ttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagca 283  Q
    |||||||||| ||||| ||||||||||  || ||||||||||||| || |||||| ||||||||||||||  |||| | |||||||||  |||||||| |    
T  17066852 ttaactcacgctggaa-ttaacacttgcatgagttaactcacgcaggggtattttagaaagttcagttggatgcgagcgaaatgtgttgcgagaagagaa 17066950  T
Q  284 taattca 290  Q
     ||||||    
T  17066951 gaattca 17066957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 4114106 - 4114150
Alignment:
Q  245 ttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||    
T  4114106 ttcagttgggcgcaagcaaaatgtgttgggagaagagcataattc 4114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 12741980 - 12741936
Alignment:
Q  245 ttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    |||||||||||||||||||||  |||| |||||||||||||||||    
T  12741980 ttcagttgggcgcgaacaaaacttgttgggagaagagcataattc 12741936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 12804795 - 12804751
Alignment:
Q  245 ttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    |||||||||||||||||||||  |||| |||||||||||||||||    
T  12804795 ttcagttgggcgcgaacaaaacttgttgggagaagagcataattc 12804751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 17854742 - 17854694
Alignment:
Q  176 tgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcac 225  Q
    |||||| ||||||||||| || ||||||||||||||||| ||||||||||    
T  17854742 tgcgtgagttaactcacgctg-aaattaacacttgtgtgagttaactcac 17854694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 290
Target Start/End: Complemental strand, 44798894 - 44798648
Alignment:
Q  44 tctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgt 143  Q
    |||| ||||| |||||  |||||  ||||| |||||| |||||||||| | ||||||||||||||  |||||||||||||||  |||||||||||||||     
T  44798894 tctcccaacacattttgttcgcgtccaactgaaatatcgaaaatacccctgcgttagttaagtaatgcatgtgttaaaatctatgcatcttaacatgcgc 44798795  T
Q  144 tacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaa 243  Q
    | | ||| |||| || || ||||| ||||||||||||| ||||||||||||||| ||||||||| || ||| ||||||||||  |  | |||||| | ||    
T  44798794 tgcacaatttaattcacgctggaactaacacttgcgtgagttaactcacgttgggaattaacacgtgcgtgagttaactcacttagcggtattttaggaa 44798695  T
Q  244 gttcagttgggcgcgaacaaaatgtgttcggagaagagcataattca 290  Q
    |||||||| ||||||| ||||||||||| ||||||||||| ||||||    
T  44798694 gttcagttaggcgcgagcaaaatgtgttgggagaagagcaaaattca 44798648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 39926618 - 39926443
Alignment:
Q  51 acatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaa 150  Q
    ||||||||| ||||||  ||||| |||||| ||||||||| ||| |||||||||||||| ||  |||||||||||||| ||||||||||||| | |||||    
T  39926618 acatattttgctcgcgtccaacttaaatatcgaaaatacctatatgttagttaagtaacgcagatgttaaaatctgcg-atcttaacatgcgctgcgcaa 39926520  T
Q  151 cttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgc 227  Q
    |||||||| || |||||||||||||| |||| |||||||||||||| ||||||||||||| |||  |||| ||||||    
T  39926519 cttaactcacgctggaattaacactttcgtgagttaactcacgttgaaaattaacacttgcgtgaattaattcacgc 39926443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 22754662 - 22754806
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||| ||||||||||| |||||||  ||||  |||| ||||||||| ||| ||||||||||||||   | ||||||||||||||||||     ||||    
T  22754662 tcttctcccaacatattttgctcgcgcgtaactagaatactgaaaatactcatgcgttagttaagtaatgtaagtgttaaaatctgcgcat-----catg 22754756  T
Q  141 cgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcac 192  Q
    || |  |||||||||||| || ||||||||||||||||||| ||||||||||    
T  22754757 cgct--gcaacttaactcacgctggaattaacacttgcgtgagttaactcac 22754806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 39926471 - 39926347
Alignment:
Q  166 aattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaa 265  Q
    ||||||||||||||||  |||| ||||| || ||||||||||||| |||  ||||||||| ||  |||||||||  |||||||||| | ||||| |||||    
T  39926471 aattaacacttgcgtgaattaattcacgctg-aaattaacacttgcgtgaattaactcacacagagatattttgagaagttcagtttgacgcgagcaaaa 39926373  T
Q  266 tgtgttcggagaagagcataattcaa 291  Q
    |||||| |||||||||||||| ||||    
T  39926372 tgtgttgggagaagagcataaatcaa 39926347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 45004490 - 45004442
Alignment:
Q  145 acgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacg 193  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||    
T  45004490 acgcaacttaactcacgttggaattaacacttgcgtgagttaactcacg 45004442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 8004454 - 8004312
Alignment:
Q  49 caacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgc 148  Q
    ||||| ||||| ||||||| ||||| |||||| |||||||| | | |||||||||||||||  | |||||||||||||| |||||| ||||   || |      
T  8004454 caacacattttgctcgcgcccaactgaaatatcgaaaatactcttgcgttagttaagtaacgtaagtgttaaaatctgcacatctttacat---ttgcat 8004358  T
Q  149 aacttaactcgcgttgg-aattaacacttgcgtgggttaactcacg 193  Q
     | |||||||||| ||| ||||||||||| |||| |||||||||||    
T  8004357 gagttaactcgcgctggaaattaacacttacgtgagttaactcacg 8004312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 8004355 - 8004284
Alignment:
Q  183 gttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttggg 254  Q
    |||||||| || |||||||||||||||  ||| |||||||||||||||  |||||||  |||||||||||||    
T  8004355 gttaactcgcgctggaaattaacacttacgtgagttaactcacgcaagagtattttgagaagttcagttggg 8004284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 22754818 - 22754877
Alignment:
Q  223 cacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagc 282  Q
    |||||||| ||||||||| |||||||||||  ||||| ||||||||||| ||||||||||    
T  22754818 cacgcaagaatattttgggaagttcagttgaacgcgagcaaaatgtgttgggagaagagc 22754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 19234411 - 19234353
Alignment:
Q  231 gatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    |||||||| || | ||||||||||||||| ||||||||||| ||||||||||| |||||    
T  19234411 gatattttcgatatttcagttgggcgcgagcaaaatgtgttgggagaagagcagaattc 19234353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 2811818 - 2811890
Alignment:
Q  217 ttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||||||||||| |||| ||||   || ||||||| |||| |||||| |||| |||||||||||||||||    
T  2811818 ttaactcacgcaaggttattatggactttttagttgggagcgagcaaaatatgttgggagaagagcataattc 2811890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 14264719 - 14264827
Alignment:
Q  47 ctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttac 146  Q
    ||||||||||||| |||||||  |||| |||||  |||||||||| ||||| || ||| | |||||  ||||||||||||| |  ||||||||| | | |    
T  14264719 ctcaacatattttgctcgcgcctaactaaaataccgaaaatacccctacgtgagataactcacacaattgttaaaatctgcactacttaacatgtgatgc 14264818  T
Q  147 gcaacttaa 155  Q
    |||||||||    
T  14264819 gcaacttaa 14264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 14464138 - 14464071
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagca 283  Q
    |||||||||||||  || ||||| ||||||||||||||| |||| |||||  |||| |||||||||||    
T  14464138 gttaactcacgcagagacattttcgaaagttcagttgggagcgagcaaaaattgttgggagaagagca 14464071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 16252423 - 16252383
Alignment:
Q  199 aattaacacttgtgtgcgttaactcacgcaaggatattttg 239  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  16252423 aattaacactagtgtgagttaactcacgcaagggtattttg 16252383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 44798834 - 44798894
Alignment:
Q  217 ttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggaga 277  Q
    |||||| ||||| || |||||| || | ||||||||| ||||||||||||||||| |||||    
T  44798834 ttaactaacgcaggggtattttcgatatttcagttggacgcgaacaaaatgtgttgggaga 44798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 45004483 - 45004440
Alignment:
Q  184 ttaactcacgttggaaattaacacttgtgtgcgttaactcacgca 228  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||    
T  45004483 ttaactcacgttggaa-ttaacacttgcgtgagttaactcacgca 45004440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 34328529 - 34328723
Alignment:
Q  69 caactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaacttaactcgcgttggaat 168  Q
    ||||| |||||| |||||||||  | | || |||||||||| || ||||||||||||| ||||||||||||| | | ||||| ||||||| |||||||||    
T  34328529 caactgaaatatcgaaaataccactgctttggttaagtaacgcaagtgttaaaatctgtgcatcttaacatgtgctgcgcaatttaactcacgttggaat 34328628  T
Q  169 taacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaa 265  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| || | ||  |||||||| |||||||||||| |||||||||||    
T  34328629 taacacttgcgtgagttaactcacgctgg-aattaacacttgtgtgagttaactaacac-agagtattttgggaagttcagttggacgcgaacaaaa 34328723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 11561566 - 11561368
Alignment:
Q  49 caacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgc 148  Q
    ||||||||||| ||||||| ||||| |||||  ||||||| || | | |  ||||| | || ||  |||||||||||||||||||||||||||| | |||    
T  11561566 caacatattttgctcgcgcccaactgaaataccgaaaatatccctgcatgggttaactcacgcagatgttaaaatctgcgcatcttaacatgcgctgcgc 11561467  T
Q  149 aacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttca 248  Q
    |||||||||| ||||| ||||||||||| | || |||||||||| || ||||||| |||||| ||| ||||||| ||||||||||||||||| |||||||    
T  11561466 aacttaactcacgttgaaattaacactttcctgagttaactcacatt-gaaattagcacttgcgtgagttaactaacgcaaggatattttgggaagttca 11561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 9384544 - 9384747
Alignment:
Q  50 aacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgca 149  Q
    |||| ||||| ||||| | ||||| |||||  |||| ||||| | | | |||||| | |||||||||||||||| |||||||||||||||| | | ||||    
T  9384544 aacacattttgctcgcacccaactgaaataccgaaagtacccctgcatgagttaactcacacatgtgttaaaatatgcgcatcttaacatgtgctgcgca 9384643  T
Q  150 acttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcag 249  Q
    ||||||||| |  || ||||||||||||| |  ||||||||||| ||| |||||||| ||  ||| ||||||| |||||  | |||||||||||||||||    
T  9384644 acttaactcacactgaaattaacacttgccttagttaactcacgctgg-aattaacaattacgtgagttaacttacgcagaggtattttggaaagttcag 9384742  T
Q  250 ttggg 254  Q
    |||||    
T  9384743 ttggg 9384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 39643662 - 39643557
Alignment:
Q  32 gattattgttcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcat 131  Q
    ||||| || ||||||| ||||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||||  ||||||||||||||||     
T  39643662 gattactgctcttctcccaacacattttactcgcgctcaactgaaatattgaaaatacacatgcgttacttaactaacacaaatgttaaaatctgcgcaa 39643563  T
Q  132 cttaac 137  Q
    ||||||    
T  39643562 cttaac 39643557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 43466691 - 43466823
Alignment:
Q  95 cgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgt 194  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||  |  | |||||||||| || || |||||| ||||| ||| ||||||||| |     
T  43466691 cgttagttaagtaacacaagtgttaaaatctgcgcatcttaatatgcactgtggaacttaactcacgctgaaattaatacttgtgtgagttaactcaggc 43466790  T
Q  195 tggaaattaacacttgtgtgcgttaactcacgc 227  Q
    | ||||||||||||| || | |||||| |||||    
T  43466791 tagaaattaacacttatgggagttaacccacgc 43466823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 2627518 - 2627430
Alignment:
Q  48 tcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaa 136  Q
    |||||||||||| ||||||  ||| | |||||| |||||||| |||  |||| |||||||| ||| ||||||||||||||||| |||||    
T  2627518 tcaacatattttactcgcgtccaattgaaatatcgaaaatactcatgtgttaattaagtaatacaagtgttaaaatctgcgcaacttaa 2627430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 31589499 - 31589455
Alignment:
Q  217 ttaactcacgcaaggatattttggaaagttcagttgggcgcgaac 261  Q
    |||||||||||| || |||||||| ||||||||||||||||||||    
T  31589499 ttaactcacgcatgggtattttgggaagttcagttgggcgcgaac 31589455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 2914802 - 2914844
Alignment:
Q  247 cagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||    
T  2914802 cagttgggcgcgagcaaaatgtgttgggagaagagcagaattc 2914844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 5899214 - 5899292
Alignment:
Q  204 acacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagc 282  Q
    ||||||| ||| ||||||||||||   | |||||| | ||||| |||||||||||| ||||| ||||| ||||||||||    
T  5899214 acacttgcgtgagttaactcacgctgaggtattttaggaagtttagttgggcgcgagcaaaaagtgttgggagaagagc 5899292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 2377243 - 2377154
Alignment:
Q  202 taacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattcaa 291  Q
    ||||| ||| ||| ||||||||||||| || |||||||| |||||  ||| |  |||| ||||||||| | ||||||||||| |||||||    
T  2377243 taacatttgcgtgagttaactcacgcaggggtattttgggaagtttggtttgaagcgagcaaaatgtgatgggagaagagcagaattcaa 2377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 8727188 - 8727276
Alignment:
Q  200 attaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataatt 288  Q
    ||||||||||||||  ||||| | || ||||  |||||| |  | ||||||||||||||| |||| |||||| |||||||| |||||||    
T  8727188 attaacacttgtgttagttaagtaacacaagtgtatttttggtatttcagttgggcgcgagcaaagtgtgttgggagaagaacataatt 8727276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 24582693 - 24582502
Alignment:
Q  37 ttgttcttctctcaacatatttttctcgcgctcaactcaaatattgaaaa-tacccatacgttagttaagtaacacatgtgttaaaatctgcgcatctta 135  Q
    ||||||||||| ||||| ||||| ||||||  ||| | |||||  ||||| ||||| |  |||| ||||||||  |||||||||||||||||||||||||    
T  24582693 ttgttcttctcccaacacattttcctcgcgtccaattgaaataccgaaaaatacccttgtgttaattaagtaatgcatgtgttaaaatctgcgcatctta 24582594  T
Q  136 acatgcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgc 227  Q
    ||||||| | ||||||||||||| || || |||||||||||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||||    
T  24582593 acatgcgatgcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgctgggaattaacacttgagtgagttaactcacgc 24582502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 24582462 - 24582389
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    |||||||||||||   ||||||||||||||| |||||  ||| | ||||||||||| ||||||||||| |||||    
T  24582462 gttaactcacgcagtaatattttggaaagtttagttgaacgcaagcaaaatgtgttgggagaagagcagaattc 24582389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 18206986 - 18207033
Alignment:
Q  245 ttcagttgggcgcgaacaaaatgtgttcggagaagagcataattcaaa 292  Q
    ||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  18206986 ttcagttgggcgcgagcaaaatgtgtagggagaaaagcataattcaaa 18207033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 24582532 - 24582470
Alignment:
Q  164 ggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgc 227  Q
    |||||||||||||| ||| ||||||||||| ||| |||||||||||| ||| ||||| ||||||    
T  24582532 ggaattaacacttgagtgagttaactcacgctgg-aattaacacttgcgtgagttaagtcacgc 24582470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 7269316 - 7269360
Alignment:
Q  245 ttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  7269316 ttcagttgggcgcgagcaaaatgtgttgggagacgagcagaattc 7269360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 20147329 - 20147373
Alignment:
Q  83 aaaatacccatacgttagttaagtaacacatgtgttaaaatctgc 127  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||||    
T  20147329 aaaatgcccatgcgttagttaagtaacacaagtgttaaactctgc 20147373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 31271747 - 31271931
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||||||||| ||||| |||| |  ||||| |||||   |||||||| |||||||||||||||||| ||  |||||||||||| |||||||||||||    
T  31271747 tcttctctcaacacattttgctcgagtccaactgaaataccaaaaataccaatacgttagttaagtaacgcaaatgttaaaatctgtgcatcttaacatg 31271846  T
Q  141 cgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcac 225  Q
    |  | ||||||||||||| || ||||||||| |||||| || ||||||||| | || |||||| ||||||||||  |||||||||    
T  31271847 cactgcgcaacttaactcacgctggaattaagacttgcatgagttaactcatgctgaaaattagcacttgtgtgacttaactcac 31271931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 9512516 - 9512471
Alignment:
Q  81 tgaaaatacccatacgttagttaagtaacacatgtgttaaaatctg 126  Q
    ||||||||||||| ||||||||||||||| || |||||||| ||||    
T  9512516 tgaaaatacccatgcgttagttaagtaacgcaagtgttaaactctg 9512471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 46844776 - 46844624
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||| ||| ||||||| ||||||  ||||| ||| | ||||||||||  | | ||||||||||||| ||  ||||||||||||| ||||||||||||    
T  46844776 tcttctcccaatatattttgctcgcgtccaactgaaacactgaaaatacctctgcattagttaagtaacgcagatgttaaaatctgcacatcttaacatg 46844677  T
Q  141 cgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacg 193  Q
    || | ||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  46844676 cgctgcgcaacttaactcacgttgaaattaacacttgcgtgagttaactcacg 46844624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 45682778 - 45682870
Alignment:
Q  114 gtgttaaaatctgcgcatcttaacatgcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaaca 206  Q
    |||||||||||||| |||||||||||  |||  |||||||||||| ||||||||||||||||||| || |||||||||||||  |||||||||    
T  45682778 gtgttaaaatctgcccatcttaacatatgttgtgcaacttaactcacgttggaattaacacttgcctgagttaactcacgttaaaaattaaca 45682870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 5314254 - 5314441
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||| ||| | ||||| || |||| ||||| |||||  |||||||   ||| || |||||| | || || |||||||||||||||   |||||||||    
T  5314254 tcttctcccaatacattttgcttgcgcccaactgaaataccgaaaatatttatatgtgagttaactcacgcaggtgttaaaatctgcgttacttaacatg 5314353  T
Q  141 cgttacgcaacttaactcgcgttgg-aattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgca 228  Q
     | ||||||||||||||  || ||| |||||||||||||||| ||||| ||||| ||| |||||||||||| ||| |||||||||||||    
T  5314354 agctacgcaacttaacttacgctggaaattaacacttgcgtgagttaattcacgctgg-aattaacacttgcgtgagttaactcacgca 5314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 46844665 - 46844570
Alignment:
Q  184 ttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaaga 280  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||   |||||||||| | ||||||||||||||| | ||||||||    
T  46844665 ttaactcacgttg-aaattaacacttgcgtgagttaactcacgcatggatattttaagaagttcagtttgccgcgaacaaaatgtgctaggagaaga 46844570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 23811286 - 23811329
Alignment:
Q  184 ttaactcacgttggaaattaacacttgtgtgcgttaactcacgc 227  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||    
T  23811286 ttaactcacatcggaaattaacacttgtgtgagttaactcacgc 23811329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 23811319 - 23811393
Alignment:
Q  152 ttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgca 228  Q
    ||||||| || || |||||| ||||||||| ||||||||||| ||| |||||||||||| ||| |||| ||||||||    
T  23811319 ttaactcacgctgtaattaa-acttgcgtgagttaactcacgctgg-aattaacacttgcgtgagttatctcacgca 23811393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 32306407 - 32306519
Alignment:
Q  146 cgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagt 245  Q
    ||||||||||||| || || |||||||||||||||| ||||||||||| ||||| || |||||||  || ||||||||||||| ||||||||||||||||    
T  32306407 cgcaacttaactcacgctgaaattaacacttgcgtgagttaactcacgctggaa-ttgacacttgcatgagttaactcacgcagggatattttggaaagt 32306505  T
Q  246 tcagttgggcgcga 259  Q
    ||||||||||||||    
T  32306506 tcagttgggcgcga 32306519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 252
Target Start/End: Complemental strand, 19063066 - 19062866
Alignment:
Q  51 acatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatgcgttacgcaa 150  Q
    ||||||||| ||||||||||||| ||||| | |||||||   | ||| |||||| | || ||  |||||||||||||||||||||||||||| | |  ||    
T  19063066 acatattttactcgcgctcaactgaaataataaaaatacttttgcgtgagttaattcacgcagctgttaaaatctgcgcatcttaacatgcgctgcaaaa 19062967  T
Q  151 cttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagt 250  Q
     |||||||  | |||||||||||||||  || ||||||||||| || ||||||||||||| |||  |||||||| ||| ||||||||| |||||||| ||    
T  19062966 tttaactcatgctggaattaacacttgtctgagttaactcacgctg-aaattaacacttgcgtgaattaactcatgcagggatattttagaaagttccgt 19062868  T
Q  251 tg 252  Q
    ||    
T  19062867 tg 19062866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 8360283 - 8360166
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||| ||||| ||||  ||||| | ||||| |||||| |||||||||| |   ||||||||||||| |||||||||||||| |||||||||||||||    
T  8360283 tcttctcccaacacatttcactcgcacccaactgaaatatcgaaaatacccctgtattagttaagtaacgcatgtgttaaaatcagcgcatcttaacatg 8360184  T
Q  141 cgttacgcaacttaactc 158  Q
    |  | |||||||||||||    
T  8360183 ctgtgcgcaacttaactc 8360166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 21258381 - 21258291
Alignment:
Q  163 tggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttggg 254  Q
    |||||||||||||||  |  ||||||||||| ||||| |||||||||| ||| |||||||||||||  | |||||||| |||||||||||||    
T  21258381 tggaattaacacttgtcttagttaactcacgctggaa-ttaacacttgcgtgagttaactcacgcagaggtattttgggaagttcagttggg 21258291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 29694149 - 29694004
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    ||||||| ||||||||||| ||| ||| ||||| |||||   ||||||||| |   |||||||||||||||| |||| ||||| ||||| ||||||||||    
T  29694149 tcttctcccaacatattttgctcacgcccaactgaaataccaaaaatacccctttattagttaagtaacacaggtgtcaaaatgtgcgc-tcttaacatg 29694051  T
Q  141 cgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaa 187  Q
     | | | |||||||||||    |||||||||||||||| || |||||    
T  29694050 tgctgcacaacttaactcatactggaattaacacttgcctgagttaa 29694004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 8360159 - 8360099
Alignment:
Q  230 ggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattca 290  Q
    ||||||||| | ||||||||||| |||||| ||||||||||| ||||||||||| ||||||    
T  8360159 ggatattttaggaagttcagttgagcgcgagcaaaatgtgttgggagaagagcagaattca 8360099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 41515218 - 41515291
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||||||||| || ||||||||||||||  |||||| |||| ||||||||| | | ||||||||| |||||    
T  41515218 gttaactcacgcacgggtattttggaaagtttggttgggagcgagcaaaatgtgatggaagaagagcagaattc 41515291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 32306400 - 32306312
Alignment:
Q  201 ttaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagcataattc 289  Q
    ||||||| || ||| |||||||||||||||| |||||| |  | ||||||||||| ||| |||||||| || ||  |||||||||||||    
T  32306400 ttaacacatgcgtgagttaactcacgcaagggtattttcggtaattcagttgggcccgagcaaaatgtattgggtaaagagcataattc 32306312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 21258360 - 21258319
Alignment:
Q  152 ttaactcgcgttggaattaacacttgcgtgggttaactcacg 193  Q
    ||||||| || ||||||||||||||||||| |||||||||||    
T  21258360 ttaactcacgctggaattaacacttgcgtgagttaactcacg 21258319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 24625047 - 24624901
Alignment:
Q  41 tcttctctcaacatatttttctcgcgctcaactcaaatattgaaaatacccatacgttagttaagtaacacatgtgttaaaatctgcgcatcttaacatg 140  Q
    |||||||| |||| |||||  |||||||||||| |||||  |||||||    |  ||||||||||||||||| ||||||||||||||||||||||| |||    
T  24625047 tcttctcttaacacattttattcgcgctcaactgaaataccgaaaatattactcggttagttaagtaacacaagtgttaaaatctgcgcatcttaatatg 24624948  T
Q  141 cgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaa 187  Q
    || | || ||||||| ||  ||||||||||||||||| ||| |||||    
T  24624947 cgctgcgaaacttaaatcatgttggaattaacacttgtgtgagttaa 24624901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 9863513 - 9863424
Alignment:
Q  169 taacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcga 259  Q
    |||||||||| || ||||||| ||| ||||| |||||||||||||| ||||||||||||| || ||||||| ||||||||||| |||||||    
T  9863513 taacacttgcctgagttaactgacgctggaa-ttaacacttgtgtgagttaactcacgcaggggtattttgaaaagttcagttaggcgcga 9863424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 9875776 - 9875880
Alignment:
Q  184 ttaactcacgttggaaattaacacttgtgtgcgttaactcacgcaaggatattttggaaagttcagttgggcgcgaacaaaatgtgttcggagaagagca 283  Q
    |||||||||| ||||| ||||||||||  || |||||||||||||  | |||||||||||||||| |||||||||||     |||||| |||||||| ||    
T  9875776 ttaactcacgctggaa-ttaacacttgcctgagttaactcacgcagaggtattttggaaagttcaattgggcgcgaatgttttgtgttgggagaagaaca 9875874  T
Q  284 taattc 289  Q
    ||||||    
T  9875875 taattc 9875880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 9863629 - 9863526
Alignment:
Q  123 tctgcgcatcttaacatgcgttacgcaacttaactcgcgttggaattaacacttgcgtgggttaactcacgttggaaattaacacttgtgtgcgttaact 222  Q
    ||||||||| |||||||| ||| ||||||||| ||| |  |||||||||||||||| |  ||||||||||  ||| |||||||||||| ||| ||||| |    
T  9863629 tctgcgcattttaacatgtgttgcgcaacttacctcacactggaattaacacttgcctaagttaactcacactgg-aattaacacttgcgtgagttaaat 9863531  T
Q  223 cacgc 227  Q
    |||||    
T  9863530 cacgc 9863526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 2183284 - 2183248
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttg 252  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2183284 gttaactcacgcagagatattttggaaagttcagttg 2183248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 1527 - 1484
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttgggcgcga 259  Q
    ||||||||||||| || ||||||||||||||||||||| |||||    
T  1527 gttaactcacgcaggggtattttggaaagttcagttggacgcga 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 1042 - 1078
Alignment:
Q  216 gttaactcacgcaaggatattttggaaagttcagttg 252  Q
    |||||||||||||  ||||||||||||||||||||||    
T  1042 gttaactcacgcagagatattttggaaagttcagttg 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University