View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_16 (Length: 367)
Name: NF5911_low_16
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 20054218 - 20054572
Alignment:
| Q |
13 |
aatatgtaaaagttgtgacactaggatgataattttgcagaagataaggtcatctccaaggttggatccataaattctactggtagtttgnnnnnnncgt |
112 |
Q |
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| T |
20054218 |
aatatgtaaaagttgtgacactaggatgataattttgcagaagataaggtcatctccaaggttggatccataaattctactggtagtttgtttttctctt |
20054317 |
T |
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| Q |
113 |
tgctttctttcatttgtacagtagccttcctcatcatgtatgtctaagtctaacaagcttatccaaggactgaattatttttagtaatgttttaaatcgc |
212 |
Q |
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| T |
20054318 |
tgctttctttcatttgtacagtagccttcctcatcatgtatgtctaagtctaacaagcttatccaaggactgaattatttttagtaatgttttaaatcgc |
20054417 |
T |
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| Q |
213 |
gataaagaaacggatgatgcagtctcgttcaagatcatggtatggcctaaatcactgatgcaaatcnnnnnnnaaattattaggttatgtaataattttt |
312 |
Q |
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| T |
20054418 |
gataaagaaacggatgatgcagtctcgttcaagatcatgttatggcctaaatcactgatgcagacccttttttaaattattaggttatgtaataatttgt |
20054517 |
T |
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| Q |
313 |
acatatgttatttgctgtatgtatgcatctaatatctatagttattgaatttcaa |
367 |
Q |
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| T |
20054518 |
acctatgttatttgctgtatgtatgcatctaatatctatagttgttgaatctcaa |
20054572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 19249924 - 19249735
Alignment:
| Q |
60 |
ggtcatctccaaggttggatccataaattctactggtagtttgnnnnnnncgttgctttctttcatttgtacagtagccttcctcatcatgtatgtctaa |
159 |
Q |
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| T |
19249924 |
ggtcatctccaaggttggatccacaaagtctactggtggtgtgtttttctctttgctttctttcattggtacattagccttcctcat---gtatgtctaa |
19249828 |
T |
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| Q |
160 |
gtctaacaagcttatccaaggactgaattatttttagtaatgttttaaatcgcgataaagaaacggatgatgcagtctcgttcaagatcatggtatg |
256 |
Q |
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| T |
19249827 |
gtctaacaagatcatctaaggactgaatta---ttagtaatattttaattcacgataaa-aaacggatgatgcagcctcagtcgagatcatgttatg |
19249735 |
T |
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