View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_17 (Length: 351)
Name: NF5911_low_17
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 51725718 - 51725397
Alignment:
| Q |
18 |
aaaatctcatataatattcattgtaagtagaagagacgcgacattagagtaaaatgattgtaaactcttacgaacttgtctttagccctacaccaaataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51725718 |
aaaatctcatataatattcattgtaagtagaagagacgcgacattagagtaaaatgattgtaaactcttacgaacttgtctttagccctacaccaaataa |
51725619 |
T |
|
| Q |
118 |
gtaaatcaaaatnnnnnnnctttgacctaatatttgttttcttttttnnnnnnncataccaaatattttccaatgtttattttctttgtttccctctctt |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51725618 |
gtaaatcaaaataaaaaaactttgacctaatatttgttttctttttaaaaaaaacataccaaatattttccaatgtttattttctttgtttccctcactt |
51725519 |
T |
|
| Q |
218 |
cagcctatatgttttttctgtcggttcatctcccctttgctctaaatttttactcatatttatactnnnnnnntatggttaagatatgagcaaaccaaaa |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51725518 |
cagcctatatgttttttctttcggttcatctcccctttgctctacatttttactcatatttatactaaaaaaatatggttaagatatgagcaaaccaaaa |
51725419 |
T |
|
| Q |
318 |
ttgcgggagatacaattgtagt |
339 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
51725418 |
ttgcaggagatacaattgtagt |
51725397 |
T |
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