View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_18 (Length: 351)
Name: NF5911_low_18
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 1836491 - 1836170
Alignment:
| Q |
13 |
aatattgcatttggatttgattgtatttgaaacatgacagtccactaattatttataactaaggtgtcctctaaatgctttataagcttccaatgtggga |
112 |
Q |
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| T |
1836491 |
aatattgcatttgcatttgattgtatttgaaatatgacagtccactacttatttataactaaggtgtcctctaaatgctttataagcttccgatgtggga |
1836392 |
T |
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| Q |
113 |
cttaatacggtttctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaagaacct |
212 |
Q |
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| T |
1836391 |
cttaatacggtttctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaggaacct |
1836292 |
T |
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| Q |
213 |
ttgatttttatgcattattacttattttatttaaaatattagaacactatacatgcaattaagaattatatttcgagtcaatgtgaagccgacattcttt |
312 |
Q |
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| T |
1836291 |
ttgatttttatgcattattacttattttatttaaaatattagaacactatatatgcaattaagaattatatttcgagtcaatgtgaagccgacattcttt |
1836192 |
T |
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| Q |
313 |
ccactcagccagaccaaaccat |
334 |
Q |
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| T |
1836191 |
ccactcagctggaccaaaccat |
1836170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 1833068 - 1832955
Alignment:
| Q |
61 |
ttatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggacttaatacggtttct--attcaactttttatatttttgacagaaactt |
158 |
Q |
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| T |
1833068 |
ttatttatagctatggtgtcctctcgatgctttatatgttgtcgatgtgggacttaatattgtctctctattcaactttgtatatttttgacagaaactt |
1832969 |
T |
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| Q |
159 |
ggtaaattggactt |
172 |
Q |
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| T |
1832968 |
agtaaattcgactt |
1832955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 1832912 - 1832861
Alignment:
| Q |
212 |
tttgatttttatgcattattacttattttatttaaaatattagaacactata |
263 |
Q |
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| T |
1832912 |
tttgatttctatgcattattacttcttttatttaaaagcttagaacactata |
1832861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 1846431 - 1846377
Alignment:
| Q |
62 |
tatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
116 |
Q |
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| T |
1846431 |
tatttataacaaaggtttcctctcaatgctttataagctgccagtgtgggactta |
1846377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 1848289 - 1848199
Alignment:
| Q |
27 |
atttgattgtatttgaaacatga-cagtccactaattatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
116 |
Q |
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| T |
1848289 |
atttaattgtatttgaaagatgtgcagtccaccacctatttataagtaaggtttcctctcaatgctttataagacgccaatgtgggactta |
1848199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 1824547 - 1824501
Alignment:
| Q |
157 |
ttggtaaattggactttcaaaacacattcagttcaaaacatattata |
203 |
Q |
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| T |
1824547 |
ttggtcaattggacttgccaaacacgttcagttcaaaacatattata |
1824501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 1842903 - 1842849
Alignment:
| Q |
62 |
tatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
116 |
Q |
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| T |
1842903 |
tatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggactta |
1842849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 17849082 - 17849000
Alignment:
| Q |
125 |
tctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaag |
207 |
Q |
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| T |
17849082 |
tctattcaacttcgtatatttttgacagaaacttggtcaattggacttgcaaaacacattcagttcaaaacatattatacaag |
17849000 |
T |
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