View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_2 (Length: 665)
Name: NF5911_low_2
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 37698001 - 37697351
Alignment:
| Q |
1 |
accactaaatcatctannnnnnnatatgcctatatatatgtcccaacagcaacaagcaaatgaatagaagaacaagatgatagcatcaaccatgcaacac |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37698001 |
accactaaatcatctatttttttatatgcctatatatatgtcccaacagcaacaagcaaatgaatagaagaacaagatgatagcatcaaccatgcaacac |
37697902 |
T |
|
| Q |
101 |
ttcctctcatgcatactacttctcttaatcataaccacacaacgtttcatcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697901 |
ttcctctcatgcatactacttctcttaatcataaccacacaacgcttcatcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttac |
37697802 |
T |
|
| Q |
201 |
tccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37697801 |
tccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatgcga |
37697702 |
T |
|
| Q |
301 |
ctcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
37697701 |
ctcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttcttgacgatttc |
37697602 |
T |
|
| Q |
401 |
tctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
37697601 |
tctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgattacctcaccctcagccataccataccagcat |
37697502 |
T |
|
| Q |
501 |
ctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37697501 |
ctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcc |
37697402 |
T |
|
| Q |
601 |
tctctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
651 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37697401 |
tcgctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
37697351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 150 - 651
Target Start/End: Original strand, 38013229 - 38013735
Alignment:
| Q |
150 |
tcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatggga |
249 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||| | | |||||||| | || ||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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|
| T |
38013229 |
tcattccttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatggga |
38013328 |
T |
|
| Q |
250 |
tccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagac------------cgagtcgccaaccttggtctcgacgacctc |
337 |
Q |
| |
|
|||||||| || || ||||||||| |||||||||| |||||||||||| |||||||| ||||| | ||||||| |||||| |||| |
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|
| T |
38013329 |
tccaaaca-ca--gactgctgcaacaacaaatggaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaacctt |
38013425 |
T |
|
| Q |
338 |
aacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcc |
437 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
38013426 |
gacctacctaaacctgttccaattccaccctccatcgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactatcc |
38013525 |
T |
|
| Q |
438 |
---caccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaaagatg |
534 |
Q |
| |
|
|||||||||||| |||||||| || ||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| || ||| |||| |
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|
| T |
38013526 |
tcccaccgtccatcttcaaactca--aaacttaagtacctcaccctcag--atac---accaacatctccggcgagataccaaacaccctctcacagatc |
38013618 |
T |
|
| Q |
535 |
aaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctctctccctaagcttgaaataatctctttagacg |
634 |
Q |
| |
|
||||| || ||||| ||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||||| ||| | |||| |||| |||| |
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|
| T |
38013619 |
aaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccccactacactctcctctctccctaaccttacagaaatcactttggacg |
38013718 |
T |
|
| Q |
635 |
gcaaccaactcacaggt |
651 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
38013719 |
gcaaccaactcaaaggt |
38013735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37993702 - 37993802
Alignment:
| Q |
150 |
tcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatggga |
249 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| |||||||||| || || | | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37993702 |
tcattccttcactctcagaacaatgcaatccacatgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatggga |
37993801 |
T |
|
| Q |
250 |
t |
250 |
Q |
| |
|
| |
|
|
| T |
37993802 |
t |
37993802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 493 - 599
Target Start/End: Original strand, 37994043 - 37994149
Alignment:
| Q |
493 |
accagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgctt |
592 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||| ||||||||| || |||||| ||| | ||||||||||||||||||||||||| || | |
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|
| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctccccgcat |
37994142 |
T |
|
| Q |
593 |
cactctc |
599 |
Q |
| |
|
||||||| |
|
|
| T |
37994143 |
cactctc |
37994149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 37989519 - 37989616
Alignment:
| Q |
157 |
ttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
254 |
Q |
| |
|
||||| ||| ||||| ||||| | | |||||||| | || |||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
37989519 |
ttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
37989616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 543
Target Start/End: Original strand, 25326162 - 25326518
Alignment:
| Q |
188 |
aaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagg |
287 |
Q |
| |
|
||||||||| |||| |||| ||||||||| | |||| |||||||||||| ||||||||| | |||| |||| ||| ||||||| | |||||||| | | |
|
|
| T |
25326162 |
aaagaagccctactgaaaattaaaaaagaactaggcagcccaaccaaactttcttcatggaacccaa-caac--tgactgctgcagccacaaatgggaag |
25326258 |
T |
|
| Q |
288 |
gtgtctcatgcgactcaga------ccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccat---cactaa |
378 |
Q |
| |
|
||||| |||||||||| | ||| ||| ||| |||| |||| ||||||||||||||| |||| |||| | ||||||||||||| |||||| |
|
|
| T |
25326259 |
gtgtcctatgcgactcacaaacctaccgtgtcaacaagcttgatctcttcgacctcaacctccccaaacacgttcaaattccaccctccatattcactaa |
25326358 |
T |
|
| Q |
379 |
cctccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcacc |
478 |
Q |
| |
|
|||||||||| | || ||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| | |
|
|
| T |
25326359 |
cctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatcccgccttccatctccaaactcaccaaacttgaggtcctcatc |
25326458 |
T |
|
| Q |
479 |
ctcagccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaacccta |
543 |
Q |
| |
|
|||| | || |||||||||||||||||||||||| | || ||| |||| ||||||||| |
|
|
| T |
25326459 |
atcag-----cggcacaagcatctccggcgagataccaaactcactctcacagattaaaacccta |
25326518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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