View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_low_20 (Length: 317)
Name: NF5911_low_20
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 23240565 - 23240270
Alignment:
| Q |
1 |
ccctaacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaataggattacgcatacttttaataagcacatgtcagtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
23240565 |
ccctaacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaataggattacgcatacttgtaataagcacatgttagtaat |
23240466 |
T |
|
| Q |
101 |
aatcatagagatgagcaaaaatgcaaattaacggcgatgttgatagtgagatttggttaactctcttaacttagaatcttaaattgaccaaattggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23240465 |
aatcatagagatgagcaaaaatgcaaattaacggcgatgttgatagtgagatttggttaactctcttaacttagaatcttaaattgaccaaattggtatg |
23240366 |
T |
|
| Q |
201 |
annnnnnnnnnnnnnaacaaataactctctagttctatttctcaataaaatattacgatgtcatgccttcttttttaccaaaatattatggcaatcct |
298 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23240365 |
a--ttttttttttttaacaaataactctctagttctatttctcaataaaatattatgatgtcatgccttcttttttaccaaaatattatggcaatcct |
23240270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 31302599 - 31302539
Alignment:
| Q |
3 |
ctaacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaatag |
64 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
31302599 |
ctaacattttgctaaaattatgaaaa-taacaccctaaacaaactacattgcatgtaaatag |
31302539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 25848866 - 25848791
Alignment:
| Q |
3 |
ctaacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaataggattacgcatactt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||| || ||||| |
|
|
| T |
25848866 |
ctaacattttgctaaatttatcaaaattaacaccctaatcaaactaagttgtatgataataggattaggcttactt |
25848791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 1550913 - 1550856
Alignment:
| Q |
9 |
ttttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaatagga |
66 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
1550913 |
ttttgctaaaattatgaaaactaataccctaaacaatctacattgcatgtaaatagga |
1550856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 13706438 - 13706378
Alignment:
| Q |
3 |
ctaacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaatag |
64 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
13706438 |
ctaacattttgctaaaattatgaaaa-taacaccctaaacaaactacattgcatgtaaatag |
13706378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 23062530 - 23062471
Alignment:
| Q |
4 |
taacattttgctaaatttatcaaaattaataccctaatcaaactaaattgcatgttaatag |
64 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
23062530 |
taacattttgctaaaattatgaaaa-taacaccctaaacaaactacattgcatgtaaatag |
23062471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University