View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_24 (Length: 292)
Name: NF5911_low_24
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 17500415 - 17500313
Alignment:
| Q |
52 |
gaaaccaacaacctattactaagtaagttagtttaaatactatttttcaagttaacataaattgaaaaaatgtttcagcaatgggttgatttacttggaa |
151 |
Q |
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| T |
17500415 |
gaaaccaacaaccttaaactaagtaagttagtttaaatactatttttcaagtcaacgtaaattga-aaaatgtttcagcaatgggttgatttacttggaa |
17500317 |
T |
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| Q |
152 |
cctt |
155 |
Q |
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|||| |
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| T |
17500316 |
cctt |
17500313 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 17500297 - 17500237
Alignment:
| Q |
222 |
tcaatataatggtaaccatttttatttttaaaatgttgtatactagacactacaacctatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17500297 |
tcaatataatggtaaccatttttatttttaaaatgttgtataatagacactacaacctatg |
17500237 |
T |
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