View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_25 (Length: 284)
Name: NF5911_low_25
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 38179972 - 38180237
Alignment:
| Q |
3 |
aagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctc |
102 |
Q |
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| T |
38179972 |
aagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctc |
38180071 |
T |
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| Q |
103 |
taattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtat |
202 |
Q |
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| T |
38180072 |
taattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtat |
38180171 |
T |
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| Q |
203 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaat |
268 |
Q |
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| T |
38180172 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaat |
38180237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 38184641 - 38184906
Alignment:
| Q |
3 |
aagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctc |
102 |
Q |
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| T |
38184641 |
aagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctc |
38184740 |
T |
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| Q |
103 |
taattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtat |
202 |
Q |
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| T |
38184741 |
taattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatat |
38184840 |
T |
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| Q |
203 |
atatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaat |
268 |
Q |
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| T |
38184841 |
atatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaat |
38184906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 38170182 - 38170423
Alignment:
| Q |
27 |
ccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgtt |
126 |
Q |
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| T |
38170182 |
ccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgtt |
38170281 |
T |
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| Q |
127 |
aacaagtactttagggttggtttcttca-tctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaaga |
225 |
Q |
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| T |
38170282 |
cacaagtactcttgggttgatttcttcattcaacaac-tgaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaaga |
38170380 |
T |
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| Q |
226 |
gggaaggtcacgactttcaagagagaatgacaatcctggtaat |
268 |
Q |
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||||||||| || |||| |||||||||||||||||| |||||| |
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| T |
38170381 |
gggaaggtcgcggcttttaagagagaatgacaatcccggtaat |
38170423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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