View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_26 (Length: 282)
Name: NF5911_low_26
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 3249297 - 3249565
Alignment:
| Q |
1 |
agagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249297 |
agagaccttgcccaacatgtcagcatcaacctgtttcttgccattcaaatcatttttggttttcaatttgacaggtccttcagtgttgtttgatccattc |
3249396 |
T |
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| Q |
101 |
aatttcctacaatcacatgcacattaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249397 |
aatttcctacaatcacatgcacattaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagt |
3249496 |
T |
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| Q |
201 |
actgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacgtgaatgacacaaattct |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249497 |
actgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacgtgaatgacacaaattct |
3249565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 36905329 - 36905221
Alignment:
| Q |
5 |
accttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattcaatt |
104 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
36905329 |
accttgcccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtt |
36905230 |
T |
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| Q |
105 |
tcctacaat |
113 |
Q |
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||||||||| |
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| T |
36905229 |
tcctacaat |
36905221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 269
Target Start/End: Original strand, 3243408 - 3243549
Alignment:
| Q |
131 |
gtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtact---gtactgtttatatgtataagccaa |
227 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||||||| ||| ||||||||| || |
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| T |
3243408 |
gtgaattattctcattggtgttgtctccttccttgcattagtagtaaaaaaaattcaatctattaatagtagtaatgtactgtatatgtgtataagctaa |
3243507 |
T |
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| Q |
228 |
gcacaggaagttaagtacgtttacgtgaatgacacaaattct |
269 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
3243508 |
gcactggaaattaagtgcgtttacgtgaatgacacaaattct |
3243549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 28102670 - 28102782
Alignment:
| Q |
1 |
agagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattc |
100 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28102670 |
agagagcttgcccaacgtgtcagcatcaacctgtttcttgccactcaaatcatttctggttttcaatttgacaggtccgtcagtgttgtttgatccattc |
28102769 |
T |
|
| Q |
101 |
aatttcctacaat |
113 |
Q |
| |
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| T |
28102770 |
agtttcctacaat |
28102782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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