View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_low_27 (Length: 279)

Name: NF5911_low_27
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_low_27
NF5911_low_27
[»] chr2 (15 HSPs)
chr2 (1-266)||(13500984-13501247)
chr2 (104-148)||(43586014-43586058)
chr2 (53-162)||(33884043-33884150)
chr2 (104-145)||(14450804-14450845)
chr2 (104-144)||(24067263-24067303)
chr2 (110-150)||(31026699-31026739)
chr2 (108-155)||(18512155-18512202)
chr2 (108-150)||(16630799-16630841)
chr2 (108-149)||(11518317-11518358)
chr2 (101-162)||(39399904-39399965)
chr2 (105-149)||(11439800-11439844)
chr2 (112-140)||(12933753-12933781)
chr2 (110-150)||(18570976-18571016)
chr2 (110-162)||(30298462-30298514)
chr2 (112-184)||(42043214-42043286)
[»] scaffold0024 (1 HSPs)
scaffold0024 (104-184)||(18117-18197)
[»] chr7 (15 HSPs)
chr7 (104-165)||(1885562-1885623)
chr7 (104-148)||(5937430-5937474)
chr7 (104-148)||(44317295-44317339)
chr7 (108-147)||(2144552-2144591)
chr7 (108-163)||(35238197-35238252)
chr7 (104-165)||(22801750-22801811)
chr7 (108-144)||(2143866-2143902)
chr7 (104-148)||(48964071-48964115)
chr7 (104-135)||(25956464-25956495)
chr7 (108-162)||(18750868-18750922)
chr7 (112-165)||(10702561-10702613)
chr7 (176-209)||(13300491-13300524)
chr7 (108-140)||(10893882-10893914)
chr7 (110-150)||(38134421-38134461)
chr7 (108-136)||(44172903-44172931)
[»] chr6 (17 HSPs)
chr6 (104-150)||(10031574-10031620)
chr6 (104-149)||(6751891-6751936)
chr6 (104-165)||(19369806-19369867)
chr6 (104-156)||(5579652-5579704)
chr6 (110-147)||(5635903-5635940)
chr6 (117-162)||(23130857-23130902)
chr6 (112-149)||(29959180-29959217)
chr6 (108-196)||(34625692-34625780)
chr6 (107-162)||(1334653-1334708)
chr6 (108-147)||(14514795-14514834)
chr6 (108-150)||(3449888-3449930)
chr6 (104-162)||(22745950-22746007)
chr6 (104-148)||(785464-785509)
chr6 (104-145)||(31327824-31327865)
chr6 (108-161)||(34868170-34868223)
chr6 (112-180)||(7377953-7378021)
chr6 (108-136)||(10158002-10158030)
[»] chr8 (11 HSPs)
chr8 (104-165)||(26915249-26915310)
chr8 (104-165)||(42874511-42874572)
chr8 (102-162)||(22600521-22600581)
chr8 (104-150)||(27733851-27733897)
chr8 (104-144)||(31119097-31119137)
chr8 (104-165)||(2652328-2652388)
chr8 (104-155)||(34073987-34074038)
chr8 (111-148)||(6960692-6960729)
chr8 (104-149)||(24295146-24295191)
chr8 (104-148)||(10497825-10497869)
chr8 (108-140)||(32691757-32691789)
[»] chr4 (15 HSPs)
chr4 (104-148)||(13307883-13307927)
chr4 (104-150)||(44362670-44362716)
chr4 (110-165)||(34589721-34589776)
chr4 (104-150)||(37496708-37496754)
chr4 (110-184)||(56049847-56049920)
chr4 (108-144)||(9298943-9298979)
chr4 (104-147)||(13117436-13117479)
chr4 (108-143)||(22799906-22799941)
chr4 (113-148)||(28663498-28663533)
chr4 (104-134)||(10164863-10164893)
chr4 (107-148)||(10634996-10635037)
chr4 (104-180)||(5998791-5998867)
chr4 (108-144)||(9298809-9298845)
chr4 (104-147)||(13484030-13484074)
chr4 (110-150)||(18513256-18513296)
[»] chr5 (16 HSPs)
chr5 (105-148)||(30080511-30080554)
chr5 (104-163)||(21319954-21320013)
chr5 (101-154)||(15294931-15294984)
chr5 (104-161)||(38784799-38784856)
chr5 (110-150)||(26205775-26205815)
chr5 (104-150)||(19167585-19167632)
chr5 (108-147)||(42192283-42192322)
chr5 (110-172)||(2039864-2039926)
chr5 (105-163)||(7621245-7621303)
chr5 (110-180)||(11596470-11596540)
chr5 (104-145)||(16207600-16207641)
chr5 (122-162)||(309150-309190)
chr5 (108-140)||(645346-645378)
chr5 (108-136)||(10009844-10009872)
chr5 (112-163)||(38866444-38866496)
chr5 (110-162)||(43208289-43208341)
[»] scaffold0314 (1 HSPs)
scaffold0314 (104-149)||(8953-8998)
[»] chr1 (8 HSPs)
chr1 (110-163)||(19637759-19637812)
chr1 (110-144)||(50233411-50233445)
chr1 (108-156)||(14332407-14332454)
chr1 (104-144)||(18946043-18946083)
chr1 (105-144)||(24462280-24462319)
chr1 (108-167)||(40176590-40176649)
chr1 (104-162)||(40686767-40686825)
chr1 (104-161)||(7988460-7988517)
[»] chr3 (6 HSPs)
chr3 (104-156)||(49179724-49179776)
chr3 (107-149)||(14338495-14338537)
chr3 (112-159)||(24399660-24399707)
chr3 (108-149)||(52558141-52558182)
chr3 (108-136)||(34409355-34409383)
chr3 (105-153)||(42076759-42076807)
[»] scaffold0504 (1 HSPs)
scaffold0504 (104-148)||(8706-8750)
[»] scaffold0122 (1 HSPs)
scaffold0122 (54-99)||(10252-10297)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 13500984 - 13501247
Alignment:
Q  1 aaatcttacaattattaagatttagggtttattagggttattttagacctaagttgcacagacatttctgattgaaggtgcgtcctgacgtccgacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||| ||||||||||||  |    
T  13500984 aaatcttacaattattaagatttagggtttattagggttattttagacgtaagttgcaccgacacttctgattgaaggtgtgtcttgacgtccgacatca 13501083  T
Q  101 cggcacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtgcttcatagttttagac 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgttgtgtctggtgtctgtgcttcatagttttagac 13501183  T
Q  201 aaattcttgtataccaatttttaaaaacctaaatatatcaagtaataatggtcatgatattaatat 266  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13501184 aaattcttg--taccaatttttaaaaacctaaatatatcaagtaataatggtcatgatattaatat 13501247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 43586014 - 43586058
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  43586014 cacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 33884150 - 33884043
Alignment:
Q  53 gttgcacagacatttctgattgaaggtgcgtcctgacgtccgacacgacggcacttgtgattacattgaattatgtcattttcttaaaattttatcggcg 152  Q
    ||||||| | || ||||||||||||||||| ||||  || ||||||  || ||||||| |||||| ||||| |||||||||||| | |||||||||||      
T  33884150 gttgcactgccacttctgattgaaggtgcggcctggtgttcgacac--cgacacttgtaattacactgaatcatgtcattttctcacaattttatcggta 33884053  T
Q  153 tcgatgtgtc 162  Q
    ||||||||||    
T  33884052 tcgatgtgtc 33884043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 14450804 - 14450845
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaatttt 145  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  14450804 cacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 24067303 - 24067263
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattt 144  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  24067303 cacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 31026739 - 31026699
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  31026739 tgattacattgaattatgtcattttcttaaattattatcgg 31026699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 18512155 - 18512202
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcg 155  Q
    ||||||||||||||||||| | ||||||| ||||||||||||| ||||    
T  18512155 tgtgattacattgaattatattattttctcaaaattttatcggtgtcg 18512202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 16630841 - 16630799
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    |||||||| |||||||||||||||||||||||| | |||||||    
T  16630841 tgtgattaaattgaattatgtcattttcttaaattattatcgg 16630799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 11518358 - 11518317
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  11518358 tgtgattacattgaattacttcattgtcttaaaattttatcg 11518317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 39399965 - 39399904
Alignment:
Q  101 cggcacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    |||||| ||||| ||  ||||||||||||||||||| ||||||| ||||| ||| |||||||    
T  39399965 cggcacatgtgaataggttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgtc 39399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 11439844 - 11439800
Alignment:
Q  105 acttgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    ||||||||||||| |||||||||| ||||||| | ||||||||||    
T  11439844 acttgtgattacactgaattatgttattttctcataattttatcg 11439800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 12933753 - 12933781
Alignment:
Q  112 attacattgaattatgtcattttcttaaa 140  Q
    |||||||||||||||||||||||||||||    
T  12933753 attacattgaattatgtcattttcttaaa 12933781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 18571016 - 18570976
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  18571016 tgattacattgaattatgtcattttctcaaattattatcgg 18570976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 30298462 - 30298514
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    |||||||| |||||||||||||||| ||||| | ||||||| ||||| |||||    
T  30298462 tgattacactgaattatgtcattttattaaattattatcggtgtcgacgtgtc 30298514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 42043214 - 42043286
Alignment:
Q  112 attacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtg 184  Q
    |||||||| |||||  ||||||| ||||| | ||||||| || ||||||||||| |||||| |||| ||||||    
T  42043214 attacattcaattaattcattttattaaattattatcggtgttgatgtgtccgtgttgtgtatggtatccgtg 42043286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 18117 - 18197
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtg 184  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| || | ||||||||||||||||    
T  18117 cacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgtccgtg 18197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 1885623 - 1885562
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||    
T  1885623 cacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgt 1885562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5937430 - 5937474
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  5937430 cacttgtgattacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 44317295 - 44317339
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||    
T  44317295 cacttatgattacattgaattatgtcatttttttaaaattttatc 44317339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 2144552 - 2144591
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttat 147  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  2144552 tgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 35238197 - 35238252
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 163  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| ||| ||||||||    
T  35238197 tgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgtcc 35238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 22801750 - 22801811
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    |||||||||||||| |||||||||||||| ||| ||||||| ||||| || || ||||||||    
T  22801750 cacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgt 22801811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattt 144  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 48964071 - 48964115
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    |||||||||||| |||||||||||||||||||| | |||||||||    
T  48964071 cacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 25956495 - 25956464
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttc 135  Q
    ||||||||||||||||||||||||||||||||    
T  25956495 cacttgtgattacattgaattatgtcattttc 25956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 18750922 - 18750868
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    |||||||||||| |||||||||||||||||||| | ||| ||  |||||||||||    
T  18750922 tgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtc 18750868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10702561 - 10702613
Alignment:
Q  112 attacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    |||||||||||| |||||||||||| ||||||||||| |  |||||||||||||    
T  10702561 attacattgaat-atgtcattttctcaaaattttatcagtatcgatgtgtccgt 10702613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 13300491 - 13300524
Alignment:
Q  176 gtgtccgtgcttcatagttttagacaaattcttg 209  Q
    ||||||||||||||||||||||||||||| ||||    
T  13300491 gtgtccgtgcttcatagttttagacaaatacttg 13300524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 10893882 - 10893914
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaa 140  Q
    |||||||||||| ||||||||||||||||||||    
T  10893882 tgtgattacattcaattatgtcattttcttaaa 10893914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 38134421 - 38134461
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcgg 38134461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 44172903 - 44172931
Alignment:
Q  108 tgtgattacattgaattatgtcattttct 136  Q
    |||||||||||||||||||||||||||||    
T  44172903 tgtgattacattgaattatgtcattttct 44172931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 10031620 - 10031574
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10031620 cacttgtgattacattgaattatgtcattttctcaaaattttatcgg 10031574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 6751891 - 6751936
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  6751891 cacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 19369867 - 19369806
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| | ||||||||    
T  19369867 cacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtccgt 19369806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 5579704 - 5579652
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcga 156  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||    
T  5579704 cacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcga 5579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 5635903 - 5635940
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttat 147  Q
    |||||| |||||||||||||||||||||||||||||||    
T  5635903 tgattatattgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 23130857 - 23130902
Alignment:
Q  117 attgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||    
T  23130857 attgaattatgtcattttcttaaaatattaccggcgtcgacgtgtc 23130902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  112 attacattgaattatgtcattttcttaaaattttatcg 149  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 34625780 - 34625692
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtgcttcatagtttt 196  Q
    |||||||||||| |||||  ||||||||| ||| | ||||||| |||||||| ||  |||  ||| |||||||| ||||||||||||||    
T  34625780 tgtgattacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttcatgtttggtgtccatgcttcatagtttt 34625692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 1334708 - 1334653
Alignment:
Q  107 ttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    ||||||||||||||||||||||| |||| | ||||||||||| | ||| |||||||    
T  1334708 ttgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtc 1334653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 14514834 - 14514795
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttat 147  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  14514834 tgtgattacattgaattatatcatttttttaaaattttat 14514795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 3449888 - 3449930
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||| |||||||||||||||||  ||||||||||||||||    
T  3449888 tgtgattgcattgaattatgtcattggcttaaaattttatcgg 3449930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 22746007 - 22745950
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||| | |||||||||||    
T  22746007 cacttgtgattacattgaaatataacattttctcaaaattttatc-gtgtcgatgtgtc 22745950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 785464 - 785509
Alignment:
Q  104 cacttgtgattacattgaattatgtcatt-ttcttaaaattttatc 148  Q
    ||||||||||||||||||||||||||||| || | |||||||||||    
T  785464 cacttgtgattacattgaattatgtcattattttgaaaattttatc 785509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 31327865 - 31327824
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaatttt 145  Q
    ||||||||||| |||| |||||||| ||||||||||||||||    
T  31327865 cacttgtgattgcattaaattatgtaattttcttaaaatttt 31327824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 34868170 - 34868223
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgt 161  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||||    
T  34868170 tgtgattacattgaattatgatattctctcaaaattttatcggtgtcgacgtgt 34868223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 7378021 - 7377953
Alignment:
Q  112 attacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtc 180  Q
    ||||||||||||||||| ||||||| ||| ||||| ||| ||||  ||||| || ||||||| ||||||    
T  7378021 attacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtc 7377953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 10158030 - 10158002
Alignment:
Q  108 tgtgattacattgaattatgtcattttct 136  Q
    |||||||||||||||||||||||||||||    
T  10158030 tgtgattacattgaattatgtcattttct 10158002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 26915249 - 26915310
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  26915249 cacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgt 26915310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 42874572 - 42874511
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||    
T  42874572 cacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgt 42874511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 22600581 - 22600521
Alignment:
Q  102 ggcacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| || || ||||||||    
T  22600581 ggcacttgtgattatattgaattatgtcattttctttaaattttattggtgttgatgtgtc 22600521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 27733897 - 27733851
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  27733897 cacttgtgattacattgaattatatcattttctcaaaattttatcgg 27733851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 31119137 - 31119097
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattt 144  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  31119137 cacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 2652388 - 2652328
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    |||||||||||||||| |||||||||||||||| |||| |||||| | |||||||| |||||    
T  2652388 cacttgtgattacatt-aattatgtcattttctaaaaaatttatcagggtcgatgtatccgt 2652328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 34073987 - 34074038
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcg 155  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||| ||||    
T  34073987 cacttatgattacattaaattatgtcattttttcaaaattttatcggtgtcg 34074038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 6960692 - 6960729
Alignment:
Q  111 gattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttatc 6960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 24295146 - 24295191
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    |||||||||||||||| |||| ||||||||||| | ||||||||||    
T  24295146 cacttgtgattacattaaattgtgtcattttctcacaattttatcg 24295191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 10497825 - 10497869
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    |||||||||||||||  |||||||| ||||||| |||||||||||    
T  10497825 cacttgtgattacatcaaattatgttattttctcaaaattttatc 10497869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 32691789 - 32691757
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaa 140  Q
    |||||||||||| ||||||||||||||||||||    
T  32691789 tgtgattacattcaattatgtcattttcttaaa 32691757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 13307927 - 13307883
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  13307927 cacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 44362716 - 44362670
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  44362716 cacttgtgattacattaaattatgtcattttctcaaaattttatcgg 44362670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 34589721 - 34589776
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgt 165  Q
    ||||||||||||||||||||||||||| ||| | ||||||| ||| ||||||||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgt 34589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 37496754 - 37496708
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||    
T  37496754 cacttgtgattacattgaattatgtcattttctcaaaaaattatcgg 37496708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 56049920 - 56049847
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtccgtg 184  Q
    ||||||||||||| |||||||||| || ||| | ||||||| |||||||||||||| | ||||| ||||||||||    
T  56049920 tgattacattgaactatgtcattt-ctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtccgtg 56049847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 9298979 - 9298943
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattt 144  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9298979 tgtgatgacattgaattatgtcattttcttaaaattt 9298943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 13117479 - 13117436
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttat 147  Q
    ||||||||||||||||||||| |||||||||||  |||||||||    
T  13117479 cacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 22799906 - 22799941
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaatt 143  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22799906 tgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 28663533 - 28663498
Alignment:
Q  113 ttacattgaattatgtcattttcttaaaattttatc 148  Q
    |||||||||||||||||||||||| |||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatc 28663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Original strand, 10164863 - 10164893
Alignment:
Q  104 cacttgtgattacattgaattatgtcatttt 134  Q
    |||||||||||||||||||||||||||||||    
T  10164863 cacttgtgattacattgaattatgtcatttt 10164893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 10635037 - 10634996
Alignment:
Q  107 ttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaattttatc 10634996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 5998867 - 5998791
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtc 180  Q
    ||||| ||||| ||||||||||||| ||||||||  |||||||  ||||||||  |||| || | ||||||||||||    
T  5998867 cacttatgattgcattgaattatgttattttcttggaattttactggcgtcgacatgtcagtgtcgtgtctggtgtc 5998791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 9298845 - 9298809
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattt 144  Q
    |||||| |||||||||||||| |||||||||||||||    
T  9298845 tgtgatgacattgaattatgttattttcttaaaattt 9298809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 13484074 - 13484030
Alignment:
Q  104 cacttgtgattacatt-gaattatgtcattttcttaaaattttat 147  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||    
T  13484074 cacttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 18513256 - 18513296
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcgg 18513296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 30080511 - 30080554
Alignment:
Q  105 acttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattttatc 30080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 21319954 - 21320013
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 163  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||| | ||| ||||||||    
T  21319954 cacttgtgattacattgaattatatcattttttcaaaattttatccgtgtcaatgtgtcc 21320013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 15294984 - 15294931
Alignment:
Q  101 cggcacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtc 154  Q
    |||||||||||||||| ||||||||||||||||| | ||||| | |||||||||    
T  15294984 cggcacttgtgattaccttgaattatgtcattttttcaaaatatcatcggcgtc 15294931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 38784856 - 38784799
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgt 161  Q
    ||||||||||||||||||||||| ||||||| | | ||||||||||| | ||||||||    
T  38784856 cacttgtgattacattgaattatatcattttttcacaattttatcggtgccgatgtgt 38784799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 26205775 - 26205815
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcgg 150  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  26205775 tgattacactgaattatgtcattttctcaaaattttatcgg 26205815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 19167585 - 19167632
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttctt-aaaattttatcgg 150  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  19167585 cacttgtgattacattgaattgtgtcatttttttcaaaattttatcgg 19167632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 42192322 - 42192283
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttat 147  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 2039864 - 2039926
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgt 172  Q
    |||||||||||||| |||||||||||| ||| | ||| ||| ||||| |||||||| ||||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtccgtgttgtgt 2039926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 7621245 - 7621303
Alignment:
Q  105 acttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 163  Q
    ||||||||||||||| |||||||||| ||| || |||||||||| | ||||| ||||||    
T  7621245 acttgtgattacattaaattatgtcaatttttttaaattttatctgtgtcgacgtgtcc 7621303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 11596470 - 11596540
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttttgtgtctggtgtc 180  Q
    ||||||||||||||||||||||||||| ||| | |||||||  |||| ||||  ||  |||||||||||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgtttgtgctgtgtctggtgtc 11596540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 16207600 - 16207641
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaatttt 145  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  16207600 cacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 309190 - 309150
Alignment:
Q  122 attatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    ||||||||||||||| ||||||||||||| ||||| |||||    
T  309190 attatgtcattttctcaaaattttatcggtgtcgacgtgtc 309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 645378 - 645346
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaa 140  Q
    |||||||||||| ||||||||||||||||||||    
T  645378 tgtgattacattcaattatgtcattttcttaaa 645346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 10009872 - 10009844
Alignment:
Q  108 tgtgattacattgaattatgtcattttct 136  Q
    |||||||||||||||||||||||||||||    
T  10009872 tgtgattacattgaattatgtcattttct 10009844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 38866496 - 38866444
Alignment:
Q  112 attacattgaattatgtcattttctt-aaaattttatcggcgtcgatgtgtcc 163  Q
    ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||    
T  38866496 attacattgaattatgtcatttttttcaaaatattatcggtgtcgacgtgtcc 38866444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 43208289 - 43208341
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    ||||||||||||||||||||||||||| ||| |  |||||| || ||||||||    
T  43208289 tgattacattgaattatgtcattttctcaaattactatcggtgttgatgtgtc 43208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 8998 - 8953
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8998 cacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 19637812 - 19637759
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtcc 163  Q
    |||||||||||||| |||||||||||||||| | ||||||| ||||||||||||    
T  19637812 tgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtcc 19637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 50233445 - 50233411
Alignment:
Q  110 tgattacattgaattatgtcattttcttaaaattt 144  Q
    |||||||||||||||||||||||||||||||||||    
T  50233445 tgattacattgaattatgtcattttcttaaaattt 50233411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 14332454 - 14332407
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcga 156  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||    
T  14332454 tgtgattacattgaattatgtcattttc-tcaaattttatcggtgtcga 14332407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 18946043 - 18946083
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattt 144  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  18946043 cactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 24462280 - 24462319
Alignment:
Q  105 acttgtgattacattgaattatgtcattttcttaaaattt 144  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaattt 24462319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 40176649 - 40176590
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgttt 167  Q
    |||||||||||||||| | |||||||||| ||||||||||||| || || ||||| ||||    
T  40176649 tgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtgtcggttt 40176590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 40686767 - 40686825
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtc 162  Q
    ||||| ||||||||||||||||| ||||||| | ||||||||||||  ||||| |||||    
T  40686767 cacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgacgtgtc 40686825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 7988460 - 7988517
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgt 161  Q
    ||||| ||||||||||||||||||||| ||||||||| | ||||| | ||||| ||||    
T  7988460 cacttatgattacattgaattatgtcactttcttaaattattatcagtgtcgacgtgt 7988517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 49179724 - 49179776
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcga 156  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||    
T  49179724 cacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcga 49179776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 14338495 - 14338537
Alignment:
Q  107 ttgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  14338495 ttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 24399660 - 24399707
Alignment:
Q  112 attacattgaattatgtcattttcttaaaattttatcggcgtcgatgt 159  Q
    ||||||||||||||||||||| ||| |||| |||||| ||||||||||    
T  24399660 attacattgaattatgtcattgtctcaaaaatttatcagcgtcgatgt 24399707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 52558141 - 52558182
Alignment:
Q  108 tgtgattacattgaattatgtcattttcttaaaattttatcg 149  Q
    |||||||||||||||||||||| |||||| ||| ||||||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 34409355 - 34409383
Alignment:
Q  108 tgtgattacattgaattatgtcattttct 136  Q
    |||||||||||||||||||||||||||||    
T  34409355 tgtgattacattgaattatgtcattttct 34409383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 42076759 - 42076807
Alignment:
Q  105 acttgtgattacattgaattatgtcattttcttaaaattttatcggcgt 153  Q
    ||||||||||||||||||||| |||||||||  | ||||||||| ||||    
T  42076759 acttgtgattacattgaattaggtcattttcccacaattttatcagcgt 42076807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 8706 - 8750
Alignment:
Q  104 cacttgtgattacattgaattatgtcattttcttaaaattttatc 148  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||    
T  8706 cacttgtggttacattgaatcatgtcattttctcaaaattttatc 8750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 10252 - 10297
Alignment:
Q  54 ttgcacagacatttctgattgaaggtgcgtcctgacgtccgacacg 99  Q
    ||||||||||| ||||||||||||||| ||||||  ||||||||||    
T  10252 ttgcacagacacttctgattgaaggtgtgtcctgctgtccgacacg 10297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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