View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_low_28 (Length: 276)

Name: NF5911_low_28
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_low_28
NF5911_low_28
[»] chr1 (7 HSPs)
chr1 (19-268)||(47636412-47636661)
chr1 (116-254)||(47287585-47287723)
chr1 (116-222)||(47574592-47574698)
chr1 (144-222)||(47607328-47607406)
chr1 (81-146)||(47568239-47568304)
chr1 (62-219)||(47711620-47711777)
chr1 (98-246)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (149-225)||(36290572-36290648)
chr4 (86-172)||(36376261-36376347)
chr4 (86-172)||(36429306-36429392)
chr4 (95-151)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (176-222)||(2712576-2712622)
chr2 (176-222)||(2717100-2717146)
chr2 (176-222)||(2723722-2723768)
chr2 (146-222)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (149-226)||(454539-454616)
chr5 (98-135)||(28419879-28419916)
chr5 (98-135)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (80-185)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 47636412 - 47636661
Alignment:
Q  19 ttatgaatagaaaatttattcagatcctgaaaaacaaaggctgttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatat 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47636412 ttatgaatagaaaatttatgcagatcctgaaaaacaaaggctgttggattggacaaggcgttacaagattattggagggattgcgcgaggcattcaatat 47636511  T
Q  119 cttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636512 cttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggca 47636611  T
Q  219 tggcaaaattattcggagtggatcaaactcaaggaaataccagtataatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47636612 tggcaaaattattcggagtggatcaaactcaaggaaataccagtagaatc 47636661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 47287585 - 47287723
Alignment:
Q  116 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 215  Q
    |||||||| ||||||||| | |||| ||| || ||||| |||||||||||||| || ||||| || ||||   || | ||||| ||||| || || ||||    
T  47287585 tatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagatgagaatttaaatcccaaaatttcagattttg 47287684  T
Q  216 gcatggcaaaattattcggagtggatcaaactcaaggaa 254  Q
    | ||||||| | |||| || || |||||||||| |||||    
T  47287685 ggatggcaagaatatttggtgttgatcaaactcgaggaa 47287723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 47574592 - 47574698
Alignment:
Q  116 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 215  Q
    ||||| |||||||||||| | || ||||| || ||||||||||| ||| ||||| |  |  |||| |||||  |||||||||||||||| || || ||||    
T  47574592 tatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttg 47574691  T
Q  216 gcatggc 222  Q
    |||||||    
T  47574692 gcatggc 47574698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 47607328 - 47607406
Alignment:
Q  144 ttattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 222  Q
    |||| ||||||||||||||| |||| || || || || |||| | |||||||||| |||||||| || |||||||||||    
T  47607328 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 47607406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 47568239 - 47568304
Alignment:
Q  81 acaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaatta 146  Q
    |||||||||||||||| ||||||||||| ||||  ||||| ||||| |||||  | ||||||||||    
T  47568239 acaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta 47568304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 47711777 - 47711620
Alignment:
Q  62 ttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatctta 161  Q
    |||||||||  |||||| ||||| || |||||||| || ||| ||||| |||  || |||||||| ||||||   |||   ||||| |||||||||||||    
T  47711777 ttggattgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatctta 47711678  T
Q  162 aagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcat 219  Q
    |||| || |||||  | ||||||| | |  ||||||| ||||| || |||||||||||    
T  47711677 aagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcat 47711620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 6497909 - 6497761
Alignment:
Q  98 attgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatc 197  Q
    ||||||||||||||||  || ||||| || |||||| | ||    ||||||||||||||||| ||||| || |||||  | || |||| ||| |||||||    
T  6497909 attgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatc 6497810  T
Q  198 caaaaatctcggactttggcatggcaaaattattcggagtggatcaaac 246  Q
    | || || || || ||||||||||||| | |||| || ||||| |||||    
T  6497809 ctaagatatctgattttggcatggcaagactatttggtgtggaccaaac 6497761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 36290572 - 36290648
Alignment:
Q  149 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaa 225  Q
    ||||| ||||| ||||| |||||||| |||||||||| | |||||||||||||||| || ||||||||| |||||||    
T  36290572 catcgagatctaaaagcaagcaacattttgttggatgaaaatatgaatccaaaaatttcagactttggcttggcaaa 36290648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 36376261 - 36376347
Alignment:
Q  86 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 172  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36376261 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36376347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 36429306 - 36429392
Alignment:
Q  86 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 172  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36429306 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36429392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 36389512 - 36389568
Alignment:
Q  95 gggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcat 151  Q
    ||||||||||||||| ||  |||||||||| ||||||| ||||| ||||| ||||||    
T  36389512 gggattgctcgaggcgttttatatcttcatcaagattcaaggctgaaaatcattcat 36389568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 2712622 - 2712576
Alignment:
Q  176 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 222  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||    
T  2712622 ttgttggatggagaaatgaatccaaaaatatctgactttggcatggc 2712576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 2717146 - 2717100
Alignment:
Q  176 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 222  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2717146 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2717100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 2723768 - 2723722
Alignment:
Q  176 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 222  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2723768 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2723722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2698577 - 2698501
Alignment:
Q  146 attcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 222  Q
    |||||||| ||||| ||||| || ||||| ||||| |||| | | |||||||||||||| || ||||||||| ||||    
T  2698577 attcatcgagatctaaaagcaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc 2698501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 454616 - 454539
Alignment:
Q  149 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaa 226  Q
    ||||||||||| ||| ||||||| |||||||| |||    |||||||||||||||| || |||||||| |||||||||    
T  454616 catcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggcaaaa 454539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 28419879 - 28419916
Alignment:
Q  98 attgctcgaggcattcaatatcttcatgaagattctag 135  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28419879 attgctcgaggaattcaatatcttcatcaagattctag 28419916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 28433112 - 28433149
Alignment:
Q  98 attgctcgaggcattcaatatcttcatgaagattctag 135  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28433112 attgctcgaggaattcaatatcttcatcaagattctag 28433149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 36067213 - 36067108
Alignment:
Q  80 tacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgt 179  Q
    |||||||||||  |||||||||| ||||| ||||  ||||| ||||| ||||||   || ||||| || ||  ||||||||||| | |||||||| ||||    
T  36067213 tacaagattataagagggattgcacgaggtattctttatctacatgaggattctcatctaaaaatcatacactgtgatcttaaacccagcaacattttgt 36067114  T
Q  180 tggatg 185  Q
    ||||||    
T  36067113 tggatg 36067108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University