View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_29 (Length: 272)
Name: NF5911_low_29
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 9678206 - 9677943
Alignment:
| Q |
14 |
attctattaaaatgtcaagcttcgtccttaaatttaaccgtttatcatcaattgatcccatgtcatgttttaagaatgactgatatgagtaaaatttgac |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||| |
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| T |
9678206 |
attctattaaaatgtcaagcttggtccttaaatttaaccgtttatcatcaattgatcccatgccgtgttttaagaatgact-acatgagtaaaatttgac |
9678108 |
T |
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| Q |
114 |
cgagtcagaaactaattccatatattcataatctcaagaacttatttgagagtgtccttacaacgtctagcaattagttaaagtttagtggtttactc-- |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
9678107 |
cgagtcagaaactaattcgatatattcataatctcaagaacttatttgagagtgtccttacagcgtctagcgattagttaaagtttagtggtttactcgt |
9678008 |
T |
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| Q |
212 |
----gttttcatttatgcgttctgttaaatttcaattactgcattgttgtgttcctcatcgaagt |
272 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9678007 |
gaaagttttcacttatgcgttctgttaaatttcaattactgcattgttgtgttcctcatggaagt |
9677943 |
T |
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