View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_low_38 (Length: 251)
Name: NF5911_low_38
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 3249173 - 3248999
Alignment:
| Q |
1 |
actaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3249173 |
actaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatg |
3249074 |
T |
|
| Q |
101 |
acacagagaaattgcatgaggaagaaaatgaggatgatgttgtgatttctaatcctctttttgggatgaaatcaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3249073 |
acacagagaaattgcatgaggaagaagatgaggatgatgttgtgatttctaatcctctttttgggatgaactcaa |
3248999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 36905621 - 36905722
Alignment:
| Q |
141 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
36905621 |
tgtgatttcaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttaacaggttgcaggaagatagtgcaattcat |
36905720 |
T |
|
| Q |
241 |
ct |
242 |
Q |
| |
|
|| |
|
|
| T |
36905721 |
ct |
36905722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 36905461 - 36905596
Alignment:
| Q |
5 |
aaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacac |
104 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
36905461 |
aaaatgcacaatctaaacaggctgctactgaactacacaacataaccaattcctctgattctcatttacgtcttggaagcttgaatgacctacataacac |
36905560 |
T |
|
| Q |
105 |
agagaaattgcatgaggaagaaaatgaggatgatgt |
140 |
Q |
| |
|
|| || ||||||||||||| ||||||||||||||| |
|
|
| T |
36905561 |
aggtaacttgcatgaggaaggaaatgaggatgatgt |
36905596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 3248998 - 3248952
Alignment:
| Q |
197 |
tacataatccttttgacaggttgcaggaagatagtacaattcatctc |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3248998 |
tacataatacttttgacaggttgcaggaagatagtacaattcatctc |
3248952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 28102542 - 28102423
Alignment:
| Q |
5 |
aaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacac |
104 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28102542 |
aaaatacacaatctgaacaggctgctactgaactacacaacataaccaactcccctgattctcatttacgacttggaagcttgaatgacctacatgacac |
28102443 |
T |
|
| Q |
105 |
agagaaattgcatgaggaag |
124 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
28102442 |
cgagtacttgcatgaggaag |
28102423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 28102382 - 28102281
Alignment:
| Q |
141 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28102382 |
tgtgattttaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttgatgggttgcaggaagatagtgcaattcat |
28102283 |
T |
|
| Q |
241 |
ct |
242 |
Q |
| |
|
|| |
|
|
| T |
28102282 |
ct |
28102281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University