View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_4 (Length: 598)
Name: NF5911_low_4
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Complemental strand, 4129280 - 4128692
Alignment:
| Q |
10 |
catcatcacgaaaataaagttggaacctcccacttgtgtaattggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
109 |
Q |
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| T |
4129280 |
catcatcacgaaaataaagttggaacctcccacttgtgtagttggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
4129181 |
T |
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| Q |
110 |
aagggtgtcagtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
209 |
Q |
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| T |
4129180 |
aagggtgtcggtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
4129081 |
T |
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| Q |
210 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgta |
309 |
Q |
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| T |
4129080 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctcctgatgttagctgaacttgtgatcctgtcggtgcttgta |
4128981 |
T |
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| Q |
310 |
cgaggttgttgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaagagatttgttgctgtacc |
409 |
Q |
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| T |
4128980 |
cgaggttgttgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaagagatttgttgctgtacc |
4128881 |
T |
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| Q |
410 |
aagttgttgaaacccgaaagcaaattcaccagaaggtgatagtcatgaattgttggttgttgtagatagtgtagaacttcgagtaacgtttccaaagact |
509 |
Q |
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| T |
4128880 |
aagttgttgaaacccgaaagcaaattcaccagaaggtgatagccatgaatttttgtttgtggtagatagtgtagaacttcgagtaacgtttccaaagact |
4128781 |
T |
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| Q |
510 |
aacaaaagttgaagaaatagaatgaaaattatgtataaggtagaagaagaagaaaccatttttgagatatgaatatgatagatggtgct |
598 |
Q |
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| T |
4128780 |
aacaaaagttgaagaaatagaatgaaaattatgtataaggtagaagaagaagaaaccatttttgagatatgaatatgatagatggtgct |
4128692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 559
Target Start/End: Complemental strand, 4106090 - 4105538
Alignment:
| Q |
10 |
catcatcacgaaaataaagttggaacctcccacttgtgtaattggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
109 |
Q |
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| T |
4106090 |
catcatcattaaaataaagttggaaccttccacttgtgaaattggtctctgagaatcttgaagttaaggtggcacctaactcaagtgattgattaggcaa |
4105991 |
T |
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| Q |
110 |
aagggtgtcagtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
209 |
Q |
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| T |
4105990 |
aagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttccattatcaagcatggttccataggaaaca |
4105891 |
T |
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| Q |
210 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgta |
309 |
Q |
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|||||||||||||||||||||||||||| |||| || |||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |
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| T |
4105890 |
atatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgctagta |
4105791 |
T |
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| Q |
310 |
cgaggttgt---tgttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatattgcaagcatgaagagatttgttgctgt |
406 |
Q |
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||||||||| |||||||| ||| ||| || |||||||||||||||| ||| |||| |||||||||||||||||||||||||| | ||||||| || |
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| T |
4105790 |
cgaggttgttgctgttgttcatgtctttggcgctccaaacaatggtttgatcatgtatgttgttgtaccatattgcaagcatgaaaaagtttgttgtggt |
4105691 |
T |
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| Q |
407 |
accaagttgttgaaacccgaaagcaaattcaccagaaggtgatagtcatgaattgttg--gttgtt----gtagatagtgtagaacttcgagtaacgttt |
500 |
Q |
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| T |
4105690 |
a------ttccgaaatccgaaagcgaattcaccagaaggtgatagccatggattgttgttgttgttagtggtggagagtcttgaacttggagaaacgttt |
4105597 |
T |
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| Q |
501 |
ccaaagactaacaaaagttgaagaaatagaatgaaaattatgtataaggtagaagaaga |
559 |
Q |
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| T |
4105596 |
ccaaaggctaatataagttgaagaaaaagaatggcaattatgtaaagggtagaggaaga |
4105538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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