View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_40 (Length: 250)
Name: NF5911_low_40
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_40 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 2470776 - 2470539
Alignment:
| Q |
13 |
aatatttggaattttagcactggtaatcacaaatcttgctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgccc |
112 |
Q |
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| T |
2470776 |
aatatttggaattttagcactggtaatcacaaatcttgctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgccc |
2470677 |
T |
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| Q |
113 |
acaatgagtattaatcccaaatcacacaatagagaaattgaacccattttggttcttagtaattaatttcagaatgctaaatgttgtggtgtagtaggtg |
212 |
Q |
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| T |
2470676 |
acaatgagtattaatcccaaaacacacaatagagaaagtgaacccattttggttcttagtaattaatttcagaatgctaaatgttgtggtgtagtaggtg |
2470577 |
T |
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| Q |
213 |
ttggatgataaatgttgggggcttggggctctagtaat |
250 |
Q |
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| T |
2470576 |
ttggatgataaatgttgggggcttggggctctagtaat |
2470539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 2478566 - 2478450
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaac |
155 |
Q |
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| T |
2478566 |
ttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatgaac |
2478467 |
T |
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| Q |
156 |
ccattttggttcttagt |
172 |
Q |
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| T |
2478466 |
acattttggttcttagt |
2478450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 2483070 - 2482957
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaac |
155 |
Q |
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| T |
2483070 |
ttgtgagccttcacatagtttgctggagagtctttggcttgtgcaacgtgactacccacaatgaatattaatcctaaaacaaaccatagagaaaatgaac |
2482971 |
T |
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| Q |
156 |
ccattttggttctt |
169 |
Q |
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| T |
2482970 |
acattttggttctt |
2482957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 2469704 - 2469598
Alignment:
| Q |
55 |
attgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaa |
154 |
Q |
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| T |
2469704 |
attgtgggcgttcacgtagtctgctggtgagtcttgggcatgtgcaacgtgactacccataatgagtgttaaacctaacaggaacaatagagaaaatgaa |
2469605 |
T |
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| Q |
155 |
cccattt |
161 |
Q |
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||||||| |
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| T |
2469604 |
cccattt |
2469598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 2466404 - 2466357
Alignment:
| Q |
45 |
atcttgctgcattgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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|||||||| | ||||| |||||||||||||||||| |||||||||||| |
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| T |
2466404 |
atcttgcttcgttgtgagcgttcacatagtctgcttgtgagtcttggg |
2466357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 2473980 - 2473944
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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| T |
2473980 |
ttgtgggcattcacgtagtctgctggtgagtcttggg |
2473944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 2486239 - 2486203
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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|||||||||||||| |||||||| ||||||||||||| |
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| T |
2486239 |
ttgtgggcgttcacgtagtctgccggtgagtcttggg |
2486203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3063658 - 3063694
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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| T |
3063658 |
ttgtgggcgttcacatagtctgctcgtgagttttggg |
3063694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 18015662 - 18015626
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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|||||||||||||||||||||||| |||||| ||||| |
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| T |
18015662 |
ttgtgggcgttcacatagtctgctcgtgagttttggg |
18015626 |
T |
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