View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_44 (Length: 248)
Name: NF5911_low_44
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_44 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 34414480 - 34414243
Alignment:
| Q |
11 |
atactttgcaccatcttgaacttgaagtagtatctccacaaagtcctttttgtctgattggccatcttcactcttcttcattctcttgtgatctgcaatc |
110 |
Q |
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| T |
34414480 |
atactttgcaccatcttgaacttgaagtagtatctccacaaagtccttcttgtctgattggccatcttcactcttcttcattctcttgtgatctgcaatc |
34414381 |
T |
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| Q |
111 |
acctgatcaaagaaagaatctaatgcacagaaagtggccttaaattcagatatttggcctgtaagaatgtcaatccaacccaatgaaggaaagaaatctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34414380 |
acctgatcaaagaaagaatctaatgcacagaaagtggccttaaattcagatatttggcctgtaagaatgtcaatccaacccaatgaaggaaagaaatctc |
34414281 |
T |
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| Q |
211 |
caacactgaaagctgctaattgtttcatcatcttcctt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34414280 |
caacactgaaagctgctaattgtttcatcatcttcctt |
34414243 |
T |
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