View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_45 (Length: 247)
Name: NF5911_low_45
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_45 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 11766 - 11999
Alignment:
| Q |
6 |
agattattctatcatttctatggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagtt |
105 |
Q |
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| T |
11766 |
agattattctatcatttttgtggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagtt |
11865 |
T |
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| Q |
106 |
accgggactcgacatatttgtgtgtaccattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggattaccct |
205 |
Q |
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| T |
11866 |
accgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggactaccct |
11965 |
T |
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| Q |
206 |
tctaataaactttctatttatctttctgatgatg |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11966 |
tctaataaactttctatttatctttctgatgatg |
11999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 16386056 - 16385834
Alignment:
| Q |
17 |
tcatttctatggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagttaccgggactcg |
116 |
Q |
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|||||| | ||||||| | ||||||||||||||||| ||| | ||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
16386056 |
tcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttaccggccgacgagaagttaccgggactcg |
16385957 |
T |
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| Q |
117 |
acatatttgtgtgtaccattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggattacccttctaataaact |
216 |
Q |
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| T |
16385956 |
acatatttgtgtgtacaattgatcctgaaaaagaaccaactattgatgttatgaacactgttgtttctgctattgcaatggattacccttgtaataaact |
16385857 |
T |
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| Q |
217 |
ttctatttatctttctgatgatg |
239 |
Q |
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| T |
16385856 |
ttctatttatctttctgatgatg |
16385834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 17589219 - 17588986
Alignment:
| Q |
6 |
agattattctatcatttctatggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagtt |
105 |
Q |
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||||||||||||||||| | ||| ||||||||||||| ||||||||| ||| ||| | ||||||||| |||||||||||||||||| | || |||||||| |
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| T |
17589219 |
agattattctatcatttatgtgggttttcaaccaagcgttccgttggcggccggtgactcgttcagtgatgaccgagaaattaccggctgaagagaagtt |
17589120 |
T |
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| Q |
106 |
accgggactcgacatatttgtgtgtaccattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggattaccct |
205 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
17589119 |
accgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggtagaagttatgaacactgttgtttctgctattgctatggattaccct |
17589020 |
T |
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| Q |
206 |
tctaataaactttctatttatctttctgatgatg |
239 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
17589019 |
cctgataaactttctatttatctttctgatgatg |
17588986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 270160 - 270390
Alignment:
| Q |
9 |
ttattctatcatttctatggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagttacc |
108 |
Q |
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||||||||||| | | ||||||||||||||||||| ||| ||| ||| ||| | ||| || || ||| ||||||||||||| | |||||||||||||| |
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| T |
270160 |
ttattctatcagtcttgtggtttttcaaccaagcataccgatggcggccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttacc |
270259 |
T |
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| Q |
109 |
gggactcgacatatttgtgtgtaccattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggattacccttct |
208 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
270260 |
gggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacccttct |
270359 |
T |
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| Q |
209 |
aataaactttctatttatctttctgatgatg |
239 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
270360 |
aataagctttctatttatctttctgatgatg |
270390 |
T |
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