View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_low_46 (Length: 243)
Name: NF5911_low_46
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 4128504 - 4128712
Alignment:
| Q |
20 |
ctaggtgcggtcaaattaaggttctttacattaagctcattttcttcacccactcaaattacacaaataataataactagacatcacatatataatagtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4128504 |
ctaggtgcggtcaaattaaggttctttacattaagctcattttcttcacccactcaaattacaca---aataataactagacatcacatatataatagtc |
4128600 |
T |
|
| Q |
120 |
aattacttgcaccattaataacccannnnnnngtcatgtcacttgtgctggtaaaatttacatgcataaataaacacatttcacaaaattctagcaccat |
219 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4128601 |
aattacttgcaccattaat-actcatttttttgtcatgtcacttgtgctggtaaaatttacatgcataaataagcacatttcacaaaattctagcaccat |
4128699 |
T |
|
| Q |
220 |
ctatcatattcat |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4128700 |
ctatcatattcat |
4128712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University