View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_48 (Length: 239)
Name: NF5911_low_48
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 43452308 - 43452087
Alignment:
| Q |
18 |
aaccaagtcttcctctttcttattgaaaacggctatgagggactctactacggccatctcagtaagagtcacagtggatgggtttaggacatacagtagc |
117 |
Q |
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| T |
43452308 |
aaccaagtcttcctctttcttattgaaaacggctatgagggactctactacggccatctcagtaagagtcacagtggatgggtttaggacatacaatagc |
43452209 |
T |
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| Q |
118 |
acaacagcttctgtcaaccctttcttgaaaagagccattatacattcaacgtcggtatccacgcgtgttagagtctgaataacagaattgtctctagatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43452208 |
acaacagcttctgtcaaccctttcttgaaaagagccattatacattcaacgtcggtatccacgcgtgttagagtctgaataacagaattgtctctagatc |
43452109 |
T |
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| Q |
218 |
ccatctcagccagaaggaaaac |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
43452108 |
ccatctcagccagaaggaaaac |
43452087 |
T |
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