View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_6 (Length: 540)
Name: NF5911_low_6
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 7884882 - 7884327
Alignment:
| Q |
1 |
ttaccatgttagagctacgaagagaaaaaagtaacctagcaaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtgcatgtccgca |
100 |
Q |
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| T |
7884882 |
ttaccatgttagagctacgaagagaaaaaagtaacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgat |
7884783 |
T |
|
| Q |
101 |
acagcccgaacttcacctacactctcccctatgatctgactcctcgtaatattagtatttactattatgtaacacaagatataaataaaacataa----- |
195 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7884782 |
acagcccgaacttcacctacactctcccctattatctgactcctcgtaatattagtatttactattatgtaacacaagatataaataaaacataattgaa |
7884683 |
T |
|
| Q |
196 |
-----------------ttgtcggtatgtattatggttattaaattttaattaataattccttt---nnnnnnncatagtcatgattcaccacagggttt |
275 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7884682 |
gggaccaattatttatgttgtcggaatgtattatggttattaaattttaattaataattcctttaaaaaaaaaacatagtcatgattcaccacagggttt |
7884583 |
T |
|
| Q |
276 |
aacgcaagtagttggtgtacaaaatgtgcggatatcgtaaatcttgagatattgagttccattcatactcataaaaacatagccataannnnnnnggtta |
375 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7884582 |
aacgcaagtagttggtgtacaaagtgtgcggatatcgtaaatcttgagatattgagttccattcatactcataaaaacatagccataatttttttggtta |
7884483 |
T |
|
| Q |
376 |
a---------------aacaaaatacctctcttggtacaagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagc |
460 |
Q |
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| T |
7884482 |
aaacaaaataaaattgaacaaaatacctctcttggtacaagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagc |
7884383 |
T |
|
| Q |
461 |
a-agaaaagggtggaggtggattagttaccctatgacttggcttcctccatcaaac |
515 |
Q |
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| T |
7884382 |
agagaaaagggtggaggtggattagttaccctatgatttggcttcctccatcaaac |
7884327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 399 - 515
Target Start/End: Complemental strand, 7900127 - 7900010
Alignment:
| Q |
399 |
aagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagca-agaaaagggtggaggtggattagttaccctatgact |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7900127 |
aagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagcagagaaaagggtgggggtggattagttaccctatgact |
7900028 |
T |
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| Q |
498 |
tggcttcctccatcaaac |
515 |
Q |
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|||| ||||||||||||| |
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| T |
7900027 |
tggcgtcctccatcaaac |
7900010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 53033270 - 53033213
Alignment:
| Q |
41 |
aaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtgcatgtccg |
98 |
Q |
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||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
53033270 |
aaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccg |
53033213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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