View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_low_7 (Length: 490)
Name: NF5911_low_7
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 1321548 - 1321087
Alignment:
| Q |
18 |
cttttactcaaatattctctccacataaggtaaatctattcgggacgtgtcggacactaaattctcatacaagatttaattgctatatttttcaattaat |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1321548 |
cttttactcaaatgttctctccacataaggtaattctattccggacgtgtcgaacactaaattctcatacaagatttaattgctatatttttcaattcat |
1321449 |
T |
|
| Q |
118 |
taaaaattattgttttgagtgcttaacatacattggtgtatatggaccataccattgtgctacaatgtaaattgaccatttcgttgtgttacaatgtata |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1321448 |
taaaaattatatttttgagtgcttaacatacattggtgtatatggaccataccattgtgctacaatgtaaattgaccatttcgttgtgttacaatgtata |
1321349 |
T |
|
| Q |
218 |
tgggccataccgttgtgttactgtgtagatattatctatgagattcacgttatttcttatgaaaatttcaatatctgaaaaaagaatatgtggtagtgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1321348 |
tgggccataccgttgtgttactgtgtagatattatctatgagattcacgttatttcttatgaaaatttcaatatctgaaaaaagaatatgtggtagtgaa |
1321249 |
T |
|
| Q |
318 |
ttccaaggtggttaagaggttattgatgatgtagggtataaggttgtcttgtccctttgaatttgtgtattgagatataatgcactcaatgccggtttgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1321248 |
ttccaaggtggttaagaggttattgatgatgtagggtataaggttgtcttgtccctttgaatttgtgtattgagatataatgcactcaatgccggtttgc |
1321149 |
T |
|
| Q |
418 |
cacgtaggtgaaaatgcaaccacttttctcccaactgaaagggacaaaacatatggtatatt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1321148 |
cacgtaggtgaaaatgcaaccacttttctcccaactgaaagggacaaaacatatggtatatt |
1321087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University