View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_low_9 (Length: 466)
Name: NF5911_low_9
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 34017732 - 34017285
Alignment:
| Q |
17 |
actaacccgcctccttggccgcggcagcttcgccaaagtctacaaagctcattccctcctcgacaacgccaccaccgtcgccgtcaaaatcatcgacaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017732 |
actaacccgcctccttggccgcggcagcttcgccaaagtctacaaagctcattccctcctcgacaacgccaccaccgtcgccgtcaaaatcatcgacaag |
34017633 |
T |
|
| Q |
117 |
tcaaaaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacaccaccctaacatcctcaaaatccatgaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017632 |
tcaaaaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacaccaccctaacatcctcaaaatccatgaag |
34017533 |
T |
|
| Q |
217 |
tcatggctacaaaaaccaaaatccatcttattgttgaattcgccgccggtggtgagcttttctccgctctctcccgccgtggaagattctccgaacccac |
316 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34017532 |
tcatggctacaaaaaccaaaatccatcttatcgttgaattcgccgccggtggtgagcttttctccgctctctcccgccgtggaagattctccgaatccac |
34017433 |
T |
|
| Q |
317 |
cgctcgtttctactttcaacagcttgtctctgcgttacgtttctgccaccgtaatggcgtcgctcaccgtgatcttaaaccgcagaatctcctcctcgac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34017432 |
cgctcgtttctactttcaacagcttgtctctgcgttacgtttctgccaccgtaacggcgtcgctcaccgtgatcttaaaccgcaaaatctcctcctcgac |
34017333 |
T |
|
| Q |
417 |
gccgatgggaatctcaaggtttccgatttcggtctctctgctcctcct |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34017332 |
gccgatgggaatctcaaggtttccgatttcggtctctctgctcttcct |
34017285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 327 - 454
Target Start/End: Complemental strand, 15171972 - 15171845
Alignment:
| Q |
327 |
tactttcaacagcttgtctctgcgttacgtttctgccaccgtaatggcgtcgctcaccgtgatcttaaaccgcagaatctcctcctcgacgccgatggga |
426 |
Q |
| |
|
||||||||||||||||| || || | |||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||| || || || | |
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| T |
15171972 |
tactttcaacagcttgtttccgctctttgtttctgccaccgtaacggtatcgctcaccgcgatctcaaaccgcagaatctcctcctcgatgctgaaggta |
15171873 |
T |
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| Q |
427 |
atctcaaggtttccgatttcggtctctc |
454 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
15171872 |
atctcaaggtttccgatttcggtctctc |
15171845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 15172209 - 15172021
Alignment:
| Q |
90 |
accgtcgccgtcaaaatcatcgacaagtcaaaaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacacc |
189 |
Q |
| |
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||||||||||| ||| |||||||||| || |||||||| || || | |||||||| || || | || ||||| ||||| ||||| || || ||| | | |
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| T |
15172209 |
accgtcgccgtaaaagtcatcgacaaatccaaaaccgtcgatgcatcaatggagccacgaatcgttcgcgaaattgacgcgatgcgtcggcttcaaaatc |
15172110 |
T |
|
| Q |
190 |
accctaacatcctcaaaatccatgaagtcatggctacaaaaaccaaaatccatcttattgttgaattcgccgccggtggtgagcttttc |
278 |
Q |
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| || ||||| ||||||||||||||||| | || || ||||| || ||| | || || ||||| ||||||| ||| ||||| |||||| |
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| T |
15172109 |
atccaaacattctcaaaatccatgaagttttagccactaaaactaagatctacctcatcgttgatttcgccggcggcggtgaacttttc |
15172021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 54659554 - 54659626
Alignment:
| Q |
381 |
caccgtgatcttaaaccgcagaatctcctcctcgacgccgatgggaatctcaaggtttccgatttcggtctct |
453 |
Q |
| |
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||||||||||| || ||| |||||||||||||||||| || || |||||||| || || ||||| ||||||| |
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| T |
54659554 |
caccgtgatctcaagccggagaatctcctcctcgacgaagacggtaatctcaaagtctctgattttggtctct |
54659626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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