View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5912-Insertion-1 (Length: 924)
Name: NF5912-Insertion-1
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 635; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 241 - 914
Target Start/End: Original strand, 19137101 - 19137775
Alignment:
| Q |
241 |
agggatattaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcgacgagttcatccaatgattccggttgaggat |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19137101 |
agggatactaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcaacgagttcatccaatgattccggttgaggat |
19137200 |
T |
|
| Q |
341 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137201 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
19137300 |
T |
|
| Q |
441 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacagggcgaaggtcttgt |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19137301 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacggggcgaaggtcttgt |
19137400 |
T |
|
| Q |
541 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtgaaggtgttccatttcttgagcactgatt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137401 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtgaaggtgttccatttcttgagcactgatt |
19137500 |
T |
|
| Q |
641 |
taagctttgttagttttgcaacttttgccatgttggaaagatgaagaaacaaagaggatataggtgtatgtgagaaagtgtaaggaaggttcggttttgg |
740 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19137501 |
taagctttgctagttttgcaacttttgccatgttggaaagttgaagaaacaaagaggatataggtgtatgtgagaaagtgtagggaaggttcggttttgg |
19137600 |
T |
|
| Q |
741 |
tttgtataaaaaggtagggagaagggtgaaatggtaataagcacctaattaagaaaaagatagtggcctaaacgatagttgtgtttttgtggcatttgga |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19137601 |
tttgtataaaaaggtagggagaagggtgaaatggtaataagcacctaattaagaaaaagatagtggcctaaacgatagttgtgtttttgtggcctttgga |
19137700 |
T |
|
| Q |
841 |
ctttagtgggtatgaattttgaaccgttgtttggtttgtctttgtcaacctttatata-ttttctctctattatt |
914 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19137701 |
ctttagtgggtgtgaattttgaaccgttgtttggtttgtctttgtcaacctttatatatttttctctctattatt |
19137775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 19136871 - 19137078
Alignment:
| Q |
8 |
agtaagtgatgcagacactattaatttctaatgtgtaagtaaaatatattaataccagaatgaaataggaaaacaatacttaattaaaaacaaatgaagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19136871 |
agtaagtgatgcagacactattaatttctaatgtggaagtaaaatatattaataccagaatgaaataggaaaagaatacttaattaaaaacaaatgaagt |
19136970 |
T |
|
| Q |
108 |
aatacacc---acatgattgaaatgaaacttgtgtggagaaccaggtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaa |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19136971 |
aatacaccactacatgattgaaatgaaacttgtgtggagaaccaagtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaa |
19137070 |
T |
|
| Q |
205 |
gcattatg |
212 |
Q |
| |
|
|||||||| |
|
|
| T |
19137071 |
gcattatg |
19137078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 392
Target Start/End: Complemental strand, 51687418 - 51687326
Alignment:
| Q |
300 |
gtaataatcgacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
392 |
Q |
| |
|
|||| ||||||| |||||||| | ||||| ||||||||||||| ||| |||| |||||| |||| ||| ||||| | ||||||||||||||| |
|
|
| T |
51687418 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
51687326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University