View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5912-Insertion-2 (Length: 917)
Name: NF5912-Insertion-2
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912-Insertion-2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 258 - 917
Target Start/End: Complemental strand, 8428351 - 8427688
Alignment:
| Q |
258 |
tttcaaatttgtcatttatgttaataaaagagaacaagtactttaatattttatt----ttattttataacaaaatgatcccttttttcatccggcatag |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||| |
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| T |
8428351 |
tttcaaatttgtcatttatgttaataaaagagaacaagtactttaatatttttttattttttttttgtaacaaaatgatcccttttttcatccggcatag |
8428252 |
T |
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| Q |
354 |
tcaaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagttcttcatcttgtt |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8428251 |
tcaaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagttcttcatcttgtt |
8428152 |
T |
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| Q |
454 |
tcccaatttaatcataattttatagataatattttcatcaacaaataaatcaagtaatcaatcgaatcaattttgtttcaaactaagattaaataataca |
553 |
Q |
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| T |
8428151 |
tcccaatttaatcataattttatagataatattttcatcaacaaataaatcaagtaatcaatcgaatcgattttgtttcaaactaagattaaataataca |
8428052 |
T |
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| Q |
554 |
catatgaatcgtagtttaagagtgatgaatttagatacatgaacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagta |
653 |
Q |
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|||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8428051 |
catatgaatcctagtttaagagtggtgaatttagacacatgaacttagcaataaacatctaagtaaacactttttatctgagtttgatggaaagagagta |
8427952 |
T |
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| Q |
654 |
acaatgcatattttttatgacataacgcaccagataaacacttttactaacataaatgactatttaaaataaataaaatgattaatatgatacaaacatt |
753 |
Q |
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| T |
8427951 |
acggtgcatat-ttttatgacataacgcactaggtaaacacttttactaacataaatgactatttaaaataaataaaatgattaatatgatacaaacgtt |
8427853 |
T |
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| Q |
754 |
aaatttggacctcaaaatgtatgtggccaaatctttacaaatatcggtagaaactcagatttctaaagccaaacaatcacaagaagtagttttttaaaac |
853 |
Q |
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| T |
8427852 |
aaatttggacctcaaaatgtatgtggccaaatctttacaaatatcagtagaaattcagatttctaaagctaaacaatcacaagaagtagttttttaaaac |
8427753 |
T |
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| Q |
854 |
attggtgttagtgcgaatttttgttaaatggaggccc-aaaatgacgtactaaataagaaggccg |
917 |
Q |
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| T |
8427752 |
attggtgttagtgcgaatttttgttaaatggaggcccaaaaatgacgtactaaataagaaggccg |
8427688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 8428563 - 8428435
Alignment:
| Q |
9 |
ggaagggctttaggttctgtcaagcttcatgtggacttagagattagagttattttgaatagttttggaggttagagttaatcacatctatagataaata |
108 |
Q |
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| T |
8428563 |
ggaagggctttaggttctgtcaagcttcatgtggacttagagattagagttattttgaatagttttggaggttagagttaatcacatctatagataaata |
8428464 |
T |
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| Q |
109 |
aatcatcgtcctgatatttttgaggatgg |
137 |
Q |
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|||| ||||||| ||||||| |||||||| |
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| T |
8428463 |
aatcgtcgtcctcatattttagaggatgg |
8428435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 8428424 - 8428377
Alignment:
| Q |
170 |
tttttagggctggcctctttgtttacataaatataacacagattcgtc |
217 |
Q |
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| T |
8428424 |
tttttagggctggcctctttgtttacataaatataacacagattcgtc |
8428377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 641
Target Start/End: Complemental strand, 42241951 - 42241878
Alignment:
| Q |
568 |
tttaagagtgatgaatttagatacatgaacttagcaatatacatctacgtaaacactttttatctgagtttgat |
641 |
Q |
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| T |
42241951 |
tttaagagtggtgaatttagatatatgaacttaacattaaacgtccacataaacactttttaactaagtttgat |
42241878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 47808912 - 47808836
Alignment:
| Q |
595 |
aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttat |
671 |
Q |
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| T |
47808912 |
aacttagcaataaacatccacataagcactttttaaccgagtttgatggaaagagagtaacgatgcatgtattttat |
47808836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 585
Target Start/End: Complemental strand, 11644450 - 11644384
Alignment:
| Q |
519 |
atcaattttgtttcaaactaagattaaataatacacatatgaatcgtagtttaagagtgatgaattt |
585 |
Q |
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| T |
11644450 |
atcaaatttgtttcaaattaagactaaataatatacatatgaatcctaattttagaatgatgaattt |
11644384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 35749135 - 35749069
Alignment:
| Q |
356 |
aaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaaca |
422 |
Q |
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| T |
35749135 |
aaaaagtgcttacatgatcatttaacattgatgtcaaaagttcaaagagtgtttatgataccaaaca |
35749069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 365 - 541
Target Start/End: Original strand, 4187287 - 4187463
Alignment:
| Q |
365 |
ttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagt-tcttcatcttgtttcccaattta |
463 |
Q |
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| T |
4187287 |
ttacatgatcatttaacattgaggtggaaggtccaattagtgtttatgacatcaaacatgattacttacatacattatcttcttattgttttctaattta |
4187386 |
T |
|
| Q |
464 |
atcataattttatagataatattttcatcaacaa----ataaatcaagtaatcaatcgaatcaattttgtttcaaactaaga |
541 |
Q |
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||| ||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
4187387 |
atcctaaatttatagataaatatttcatcaacaacgttataaatcaagtaatc-----aatcaattttgtttcaaattaaga |
4187463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 9685921 - 9685876
Alignment:
| Q |
525 |
tttgtttcaaactaagattaaataatacacatatgaatcgtagttt |
570 |
Q |
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| T |
9685921 |
tttgtttcaaactaagattgaataatacacctataaatcctagttt |
9685876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 672
Target Start/End: Original strand, 12920552 - 12920629
Alignment:
| Q |
595 |
aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttatg |
672 |
Q |
| |
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|||||||||||| ||||| || |||||| |||||| ||||||||||| ||||||| ||| |||||||| ||||||| |
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| T |
12920552 |
aacttagcaataaacatccacataaacaatttttaactgagtttgatagaaagaggataatgatgcatatattttatg |
12920629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 5474063 - 5474106
Alignment:
| Q |
518 |
aatcaattttgtttcaaactaagattaaataatacacatatgaa |
561 |
Q |
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| T |
5474063 |
aatcaattttgtttcaaatcaagattgaataatacacatatgaa |
5474106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 43230735 - 43230770
Alignment:
| Q |
304 |
tattttattttattttataacaaaatgatccctttt |
339 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
43230735 |
tattttattttattttataacaaattgatccctttt |
43230770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 595 - 709
Target Start/End: Complemental strand, 30053769 - 30053655
Alignment:
| Q |
595 |
aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttatgacataacgcaccagataaacac |
694 |
Q |
| |
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|||||||||||| ||||| || ||| ||||||||| ||||||||||||||| | | ||| ||||||| ||||||||| ||| | || |||| ||| |
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| T |
30053769 |
aacttagcaatacacatccacataagcactttttaattgagtttgatggaaatataataatggtgcatatattttatgacttaaaggactagatgcacaa |
30053670 |
T |
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| Q |
695 |
ttttactaacataaa |
709 |
Q |
| |
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||| ||||||||||| |
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| T |
30053669 |
tttcactaacataaa |
30053655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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