View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5912-Insertion-3 (Length: 915)
Name: NF5912-Insertion-3
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912-Insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 842; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 7 - 908
Target Start/End: Complemental strand, 14281968 - 14281063
Alignment:
| Q |
7 |
caaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaag |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281968 |
caaagagatgagagttgtggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaag |
14281869 |
T |
|
| Q |
107 |
agttggtaattaagaaaggggaccatgctgctattgtaggaacagtcggatcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281868 |
agttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtgttgggagaaatgttcaagat |
14281769 |
T |
|
| Q |
207 |
ctcaggaaaggtatgttaatgaggaatttatctcatcctttattgtgaataatttacttatagtatggaatgcaatagagaaatgcatcaaagctaattc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281768 |
ctcaggaaaggtatgttaatgaggaatttatctcatcctttattgtgaataatttacttatagtatggaatgcaatagagaaatgcatcaaagctaattc |
14281669 |
T |
|
| Q |
307 |
ttgtggcagtagggactatttagatttgtttatttatctatgagcataagcattagtgagtgtgcttttgttacaagaattcatgactatgcttttcaaa |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281668 |
ttgtgacagtagggactatttagatttgtttatttatctatgagcataagcattagtgagtctgcttttgttacaagaattcatgactatgcttttcaaa |
14281569 |
T |
|
| Q |
407 |
tgtattcaaaaacatttaatcgattagtcaatgttgttctgtgaaaagttgcctttatcattagtagatgtcatcattacttgtaaaatatgacaggcta |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14281568 |
tgtattcaaaaacatttaatcgattagtccatgttgttctgtgaaaagttgcctttatcattagtagatgtcatcattacttgtaaaatattacaggcta |
14281469 |
T |
|
| Q |
507 |
gagtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttaccaatgaacatggaaaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281468 |
gagtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttaccaatgaacatggaaaa |
14281369 |
T |
|
| Q |
607 |
gtacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactgagattggagagcgcggtattaacctcagc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281368 |
gtacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactgagattggagagcgcggtattaacctcagc |
14281269 |
T |
|
| Q |
707 |
ggaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgatgatgtattcagtgccgttgatgctcaaacag |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281268 |
ggaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgatgatgtattcagtgccgttgatgctcaaacag |
14281169 |
T |
|
| Q |
807 |
gatcatttatttttaaggcaagcac-aagtt-aaacttacaagaagtgct-aatagcttcattttctag-ttttaatgatataatactgtcagttttaaa |
902 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14281168 |
gatcatttatttttaaggcaagcacaaagttaaaacttacaagaagggctaaatagcttcattttctagtttttaatgatataatactgtcagttttaaa |
14281069 |
T |
|
| Q |
903 |
tttcta |
908 |
Q |
| |
|
|||||| |
|
|
| T |
14281068 |
tttcta |
14281063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 499 - 876
Target Start/End: Complemental strand, 14302860 - 14302480
Alignment:
| Q |
499 |
acaggctagagtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttaccaatgaac |
598 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14302860 |
acaggttagagtttgtgggacgacggcatatgtagcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttgccaatgaac |
14302761 |
T |
|
| Q |
599 |
atggaaaagtacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactgagattggagagcgcggtatta |
698 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14302760 |
atggaaaagtacaaggaagctctaagagtgtgctgccttgaaaaggatcttgtaatgatggaagatggtgacgaaaccgagattggagagcgcggtatta |
14302661 |
T |
|
| Q |
699 |
acctcagcggaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgatgatgtattcagtgccgttgatgc |
798 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14302660 |
acctcagtggcggccagaaacagcgcatacaacttgctagagctgtatatcaggacagtgacatctatctccttgatgatgtattcagtgctgttgatgc |
14302561 |
T |
|
| Q |
799 |
tcaaacaggatcatttatttttaaggcaagcac-aagtta-aacttacaagaagtgct-aatagcttcattttctagtttt |
876 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14302560 |
tcaaacaggatcatttatttttaaggtaagcacaaagttacaacttacaagaagtgctaaatagcttaattttctagtttt |
14302480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 376 - 830
Target Start/End: Complemental strand, 14319427 - 14318977
Alignment:
| Q |
376 |
gttacaagaattcatgactatgcttttcaaatgtattcaaaaacatttaatcgattagtcaatgttgttctgtgaaaagttgcctttatcattagtagat |
475 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||| ||||||||| || | || || ||||| ||||||||| || | |||||| || | | |
|
|
| T |
14319427 |
gttacaagaattcatgactatacttt-caaatgtgttcgaaaacattttattgttttgtgaatgtg---ctgtgaaaatttacttttatcttttacaatt |
14319332 |
T |
|
| Q |
476 |
gtcatcattacttgtaaaatatgacaggctagagtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaaca |
575 |
Q |
| |
|
| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14319331 |
atgatcattacttgtaaaatcttacaggtcagagtttgtgggacgacggcatatgtagcacaaacatcatggattcagaatgcaaccatcaaagaaaaca |
14319232 |
T |
|
| Q |
576 |
tattgtttggtttaccaatgaacatggaaaagtacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaac |
675 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
14319231 |
tattgtttggcttaccaatgaacttggaaaagtacagggaaactttaagagtgtgctgccttgaaaaggatcttgaaatgatggaagatggtgatgaaac |
14319132 |
T |
|
| Q |
676 |
tgagattggagagcgcggtattaacctcagcggaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgat |
775 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
14319131 |
tgagattggagagcgaggtattaacctcagtggtggccagaaacaacgggtacaacttgctagagctgtatatcatgacactgacatctatctccttgat |
14319032 |
T |
|
| Q |
776 |
gatgtattcagtgccgttgatgctcaaacaggatcatttatttttaaggcaagca |
830 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
14319031 |
gatgtattcagtgctgttgatgctgaaacaggatcatttatttttaaggtaagca |
14318977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 14320117 - 14319903
Alignment:
| Q |
7 |
caaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaag |
106 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
14320117 |
caaagagaggagaattgtgatggtgatgtagccgtggagataaaagatgggaaattttcatgggatgataaggatgagaatgaggcgttgacagtggaag |
14320018 |
T |
|
| Q |
107 |
agttggtaattaagaaaggggaccatgctgctattgtaggaacagtcggatcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagat |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14320017 |
agttggtaattaagaaaggggaccgtgctgctattgtaggaactgttggttcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagat |
14319918 |
T |
|
| Q |
207 |
ctcaggaaaggtatg |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14319917 |
ctcaggaaaggtatg |
14319903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 14303706 - 14303512
Alignment:
| Q |
27 |
tggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| | || ||||| |||||||||||| |
|
|
| T |
14303706 |
tggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatggatgagaatgaggctttgcgagttaaggaattggtgattaagaaaggg |
14303607 |
T |
|
| Q |
127 |
gaccatgctgctattgtaggaacagtcggatcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagatctcaggaaaggtatg |
221 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14303606 |
gaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtgttgggggaaatgttcaagatctcaggaaaggtatg |
14303512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 423
Target Start/End: Complemental strand, 14302950 - 14302867
Alignment:
| Q |
340 |
ttatctatgagcataagcattagtgagtgtgcttttgttacaagaattcatgactatgcttttcaaatgtattcaaaaacattt |
423 |
Q |
| |
|
|||||||| ||||||| |||| ||||| || ||||||| |||||||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14302950 |
ttatctattagcataaacatttgtgagactgtttttgttgcaagaatttatgactatgcttttcaaatgtattgaaaaagattt |
14302867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 508 - 822
Target Start/End: Complemental strand, 25884480 - 25884166
Alignment:
| Q |
508 |
agtttgtgggacgacggcatatgtagcacagacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttaccaatgaacatggaaaag |
607 |
Q |
| |
|
||||||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
|
|
| T |
25884480 |
agtttgtggaacgacggcgtacgtggcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaag |
25884381 |
T |
|
| Q |
608 |
tacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactgagattggagagcgcggtattaacctcagcg |
707 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
25884380 |
tacagggaagctttaagggtgtgctgccttgaaaaggatcttgaaatgatggaagatggtgatggaaccgagattggagaacgcggtattaacctcagtg |
25884281 |
T |
|
| Q |
708 |
gaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgatgatgtattcagtgccgttgatgctcaaacagg |
807 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
25884280 |
gaggccagaaacaacgtgtgcaactagctagagctgtgtatcaggacactgacatctatctccttgatgatatattcagtgctgttgatgctcaaacagg |
25884181 |
T |
|
| Q |
808 |
atcatttatttttaa |
822 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
25884180 |
atcgtttatttttaa |
25884166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 25884795 - 25884586
Alignment:
| Q |
11 |
gagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagtt |
110 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || ||| |||||||||||| |
|
|
| T |
25884795 |
gagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgagagttgaagagtt |
25884696 |
T |
|
| Q |
111 |
ggtaattaagaaaggggaccatgctgctattgtaggaacagtcggatcaggcaagtcttcattattggcttctgtgttgggagaaatgttcaagatctca |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25884695 |
ggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtgttgggagaaatgttcaagatctca |
25884596 |
T |
|
| Q |
211 |
ggaaaggtat |
220 |
Q |
| |
|
||| |||||| |
|
|
| T |
25884595 |
ggacaggtat |
25884586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 579 - 801
Target Start/End: Complemental strand, 39665019 - 39664797
Alignment:
| Q |
579 |
tgtttggtttaccaatgaacatggaaaagtacaaagaagctttaagagtgtgctgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactga |
678 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| | | ||||| || ||| | ||||| || | |||||||||||||||| || | || || |
|
|
| T |
39665019 |
tgtttggtttaccaatgaacagacaaaagtacaatgaaattatcagagtttgttgcttggaaaaagacttacaaatgatggaatatggggatcagacaga |
39664920 |
T |
|
| Q |
679 |
gattggagagcgcggtattaacctcagcggaggccagaaacaacgcatacaacttgctagagctgtatatcaagacagtgacatctatctccttgatgat |
778 |
Q |
| |
|
|||||||||||| || || ||||| || || || ||||| || || || |||||||| |||||||||| |||||| ||||||| ||||| ||||||||| |
|
|
| T |
39664919 |
gattggagagcgtggcataaaccttagtggcggtcagaagcagcgtattcaacttgcacgagctgtataccaagactgtgacatatatcttcttgatgat |
39664820 |
T |
|
| Q |
779 |
gtattcagtgccgttgatgctca |
801 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
39664819 |
gtattcagtgcagttgatgctca |
39664797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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