View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5912-Insertion-4 (Length: 885)
Name: NF5912-Insertion-4
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 841; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 9 - 884
Target Start/End: Original strand, 36883712 - 36884588
Alignment:
| Q |
9 |
aaaaccacccaaaagatgataaaacttctggtaattaaactattgctcaatgccagttacaactttagccactagaatctttgcagtgacttactggaaa |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883712 |
aaaaccacccaaaagataataaaacttctggtaattaaactattgctcaatgccagttacaactttagccactagaatctttgcagtgacttactggaaa |
36883811 |
T |
|
| Q |
109 |
tttaacttgattgctcttcatgaatggtctcaaaatagccaagctacagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883812 |
tttaacttgattgctcttcatgaatggtctcaaaatagccaagctacagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttc |
36883911 |
T |
|
| Q |
209 |
aagttaccatgggggacaggagggcagcacgccgagtgcaaatagctgaaaacatttccttgactttttagagttaagacagtattacctacaattctac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883912 |
aagttaccatgggggacaggagggcagcacgccgagtgcaaatagctgaaaacatttccttgactttttagagttaagacagtattacctacaattctac |
36884011 |
T |
|
| Q |
309 |
tttcatatgaacaggtctagaattttagtcgcagcatggaacttactccagagcctgagcaacacctaaagcaatccggagacgttggaaccacgctagt |
408 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884012 |
tttcatatgaacaagtctagaattttagtcgcagcatggaacttactccagagcctgagcaacacctaaagcaatccggagacgttggaaccacgctagt |
36884111 |
T |
|
| Q |
409 |
ggttcacttgctccactgtgaagggcatcatttagagttaaatgtccatagtaatcgtaaacaagaagatgctctccgtgctcaaaacagtaaccattga |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884112 |
ggttcacttgctccactgtgaagggcatcatttagagttaaatgtccaaagtaatcgtaaacaagaagatgctctccgtgctcaaaacagtaaccattga |
36884211 |
T |
|
| Q |
509 |
gtgctacgatattggggtgcttcagtttggaagccgtgcaaatgacatccatgaacttttcctcttctctgtaagacagacccgccatgtttatgatctt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884212 |
gtgctacgatattggggtgcttcagtttggaagccgtgcaaatgacatccatgaacttttcctcttctctgtaagacagacccgccatgtttatgatctt |
36884311 |
T |
|
| Q |
609 |
caccgccaaattcttcaacaaaacggaaaaaacgttacattaatttgaaaccaaaacatgatacaaagaaaatttcagttttgaaaaatagattaagatt |
708 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884312 |
caccgccaaattcttcaacaaaacgaaaaaaatgttacattaatttgaaaccaaaacacgatacaaagaaaatttcagttttgaaaaatagattaagatt |
36884411 |
T |
|
| Q |
709 |
atactttgccctcaggaaatacagctttgtaaacgggaccaagagatccctctcccagaaggttgccttcattaaagaagttagtagccagctgaagctc |
808 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884412 |
atactttgccctcaggaaatacagctttgtaaacgggaccaagagatccctctcccagaaggttgccttcattaaagaagttagtagccagctgaagctc |
36884511 |
T |
|
| Q |
809 |
tgctatggtataaattttcgtccttccagtggatctgcctcttttgggaaaacttcttcttgatg-ttcctccacat |
884 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
36884512 |
tgctatggtataaattttcgtccttccagtggatctgcctcttttggaaaaacttcttcttgatgtttcctccacat |
36884588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 22554205 - 22554330
Alignment:
| Q |
140 |
aaaatagccaagctacagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttcaagttaccatgggggacaggagggcagcacg |
239 |
Q |
| |
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||||||||||||| ||||||| |||||||| | ||| ||||||| |||||||| |||||||||||||||||| ||||| | |||||||||| || ||| |
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| T |
22554205 |
aaaatagccaagccacagtcagaaacacgagccatcaggttttcattcagtagaatattggcagccttcaagttgccatgagtgacaggaggggagaacg |
22554304 |
T |
|
| Q |
240 |
ccgagtgcaaatagctgaaaacattt |
265 |
Q |
| |
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||||||| ||||||| ||| |||| |
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| T |
22554305 |
tggagtgcagatagctgtaaatattt |
22554330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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