View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5912-Insertion-6 (Length: 535)
Name: NF5912-Insertion-6
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912-Insertion-6 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0010 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Complemental strand, 48170112 - 48169597
Alignment:
| Q |
20 |
ccccctagctcttttttcattgtatttatattaagggtccgttactttgtttccttgggttttggcatagtctccccaagctctttcttcattgtactta |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
48170112 |
cccccaagctcttttttcattgtatttatattaagggtcagctactttgtttccttgggttttggcatagtctccctaagctctttcttcattgtattta |
48170013 |
T |
|
| Q |
120 |
tattaagggtccgctactttgtttccttgggttttggtatagttcccccaagctcttttttcattgtattgatattaatatatttaggtgttgcacgcga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
48170012 |
tattaagggtccgctactttgtttccttgggttttggcatagttcccccaagctcttttttcattgtatttatattaatatatttaggtgttgcacgtga |
48169913 |
T |
|
| Q |
220 |
taggtggtggtggtttgggggtaccaacctagctgaaatgccttttctaccatttgatggctgtgcactttattttttgcttaaatatataatttatttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
48169912 |
taggtggtggtggtttgggggtaccaacctagctcagatgccttttctaccatttgatggttgtgcacattattttttgcttaaatatataatttatttt |
48169813 |
T |
|
| Q |
320 |
atgagtttatgcatgttgataaaattgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgccagttgttttaatttccccaaataagtgcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48169812 |
atgagtttatgcatgttgataaaattgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgctagttgttttaatttccccaaataagtgcc |
48169713 |
T |
|
| Q |
420 |
aagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcacatgcattcaccc |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48169712 |
aagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcacacgcattcaccc |
48169613 |
T |
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| Q |
520 |
acatgttttcctcttc |
535 |
Q |
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|||||||||||||||| |
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| T |
48169612 |
acatgttttcctcttc |
48169597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 48170143 - 48170007
Alignment:
| Q |
62 |
tactttgtttccttgggttttgg--catagtctccccaagctctttcttcattgtacttatattaagggtccgctactttgtttccttgggttttggtat |
159 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| || |
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| T |
48170143 |
tactttgtttccttgggttttggctcatagtc-ccccaagctcttttttcattgtatttatattaagggtcagctactttgtttccttgggttttggcat |
48170045 |
T |
|
| Q |
160 |
agttcccccaagctcttttttcattgtattgatattaa |
197 |
Q |
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||| ||| ||||||||| ||||||||||| ||||||| |
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| T |
48170044 |
agtctccctaagctctttcttcattgtatttatattaa |
48170007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 48170051 - 48169935
Alignment:
| Q |
9 |
ttggcatagtcccccctagctcttttttcattgtatttatattaagggtccgttactttgtttccttgggttttggcatagtctccccaagctctttctt |
108 |
Q |
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||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
48170051 |
ttggcatagtctccctaagctctttcttcattgtatttatattaagggtccgctactttgtttccttgggttttggcatagttcccccaagctctttttt |
48169952 |
T |
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| Q |
109 |
cattgtacttatattaa |
125 |
Q |
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||||||| ||||||||| |
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| T |
48169951 |
cattgtatttatattaa |
48169935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 523
Target Start/End: Complemental strand, 48155588 - 48155376
Alignment:
| Q |
309 |
taatttattttatgagtttatgcatgttgataaa-attgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgccagttgttttaatttccc |
407 |
Q |
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||||||||||| |||||||||||||||| | | ||| |||||| || | ||||| |||| || |||||||||||||||| ||||||||||||| ||| |
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| T |
48155588 |
taatttatttt--gagtttatgcatgttggtcaggattaccaaatctgctaaaggtggttgtcttattaatgttaactgtgctagttgttttaattaccc |
48155491 |
T |
|
| Q |
408 |
caaataagtgccaagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcac |
507 |
Q |
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||| || || ||| ||| || | ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| || |
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| T |
48155490 |
caacaaattgtcaaatctagacct-gttctagagtcattgctctagatttttctgaaaatatccttcgtaagtgttatgatttcataaagatgagattac |
48155392 |
T |
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| Q |
508 |
atgcattcacccacat |
523 |
Q |
| |
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| || | ||||||||| |
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| T |
48155391 |
acgcttacacccacat |
48155376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 504
Target Start/End: Complemental strand, 48160419 - 48160311
Alignment:
| Q |
396 |
ttttaatttccccaaataagtgccaagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataa |
495 |
Q |
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||||||||||||| || || ||| || |||| || ||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
48160419 |
ttttaatttcccctaaaaattgcaaaatctgcaacctgttctagattcattgcactagatttttcttaaaatatgcttcacaagtgttatggcttcataa |
48160320 |
T |
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| Q |
496 |
agatgagat |
504 |
Q |
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||||||||| |
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| T |
48160319 |
agatgagat |
48160311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 48170150 - 48170079
Alignment:
| Q |
127 |
ggtccgctactttgtttccttgggttttggt--atagttcccccaagctcttttttcattgtattgatattaa |
197 |
Q |
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||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
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| T |
48170150 |
ggtccactactttgtttccttgggttttggctcatagt-cccccaagctcttttttcattgtatttatattaa |
48170079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 504
Target Start/End: Complemental strand, 48155264 - 48155138
Alignment:
| Q |
374 |
ttaatgttaactgtgccagttgttttaatttccccaaataagtgccaagtctggaatttgttctagagtcattgctctagatt-tttctaaaaatatgct |
472 |
Q |
| |
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|||||||||||| ||| || ||||||||||||||| | || |||||| ||||| | ||||||||||||||||| ||||||| ||| | |||||||||| |
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| T |
48155264 |
ttaatgttaactttgctagctgttttaatttcccctacaaattgccaaatctggtacctgttctagagtcattgcgctagattgtttttgaaaatatgct |
48155165 |
T |
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| Q |
473 |
tcataagtgttatggtttcataaagatgagat |
504 |
Q |
| |
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| ||| ||||||||||||||||||||| |
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| T |
48155164 |
ccgtaa-----atggtttcataaagatgagat |
48155138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 14197137 - 14197065
Alignment:
| Q |
432 |
tgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagat |
504 |
Q |
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||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14197137 |
tgttctagattcattgcactagatttttcttaaaatatgcttcataagtgttatggcttcataaagatgagat |
14197065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 21847752 - 21847719
Alignment:
| Q |
65 |
tttgtttccttgggttttggcatagtctccccaa |
98 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
21847752 |
tttgtttccttgggttttggcatagtctacccaa |
21847719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 159662 - 159610
Alignment:
| Q |
132 |
gctactttgtttccttgggttttggtatagttcccccaagctcttttttcatt |
184 |
Q |
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|||||||||||| |||||||||||| |||| ||||||||||||||||||||| |
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| T |
159662 |
gctactttgttttcttgggttttggcctagtgcccccaagctcttttttcatt |
159610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 159660 - 159610
Alignment:
| Q |
62 |
tactttgtttccttgggttttggcatagtctccccaagctctttcttcatt |
112 |
Q |
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|||||||||| ||||||||||||| |||| ||||||||||||| |||||| |
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| T |
159660 |
tactttgttttcttgggttttggcctagtgcccccaagctcttttttcatt |
159610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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