View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5912_high_1 (Length: 449)
Name: NF5912_high_1
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 8428446 - 8428861
Alignment:
| Q |
17 |
aatatcaggacgatgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
116 |
Q |
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| T |
8428446 |
aatatgaggacgacgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
8428545 |
T |
|
| Q |
117 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
216 |
Q |
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| T |
8428546 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
8428645 |
T |
|
| Q |
217 |
tagnnnnnnnccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
316 |
Q |
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| T |
8428646 |
tggaaaaaaaccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
8428745 |
T |
|
| Q |
317 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8428746 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
8428845 |
T |
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| Q |
417 |
ttgtcattgcagtttc |
432 |
Q |
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| T |
8428846 |
ttgtcattgcagtttc |
8428861 |
T |
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