View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5912_low_2 (Length: 363)
Name: NF5912_low_2
Description: NF5912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5912_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 4570464 - 4570821
Alignment:
| Q |
1 |
caagagcaataagcaattgcactgcactcacacacacatccacactttatatcaatattgggtgaacaatctaagttgtgttaaagggggtgatttagat |
100 |
Q |
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| T |
4570464 |
caagagcaataagcaattgcactgcactcacacacacatccacactttatatcaatattgggtgaacaatctaagttgtgttaaagggggtgatttagat |
4570563 |
T |
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| Q |
101 |
gtttgttgtggaatccatacatgaggacaatcctgctcaaaacttattaaatgcacaatttatgtgtaatcccataaactaggaattgattgatcaaatt |
200 |
Q |
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| T |
4570564 |
gtttgttgtggaatccatacatgaggacaatcctgctcaaaacttattaaatgcacaatttatgtgtaatcccataaactaggaattgattgatcaaatt |
4570663 |
T |
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| Q |
201 |
taatgtattttctcttttgcttag-nnnnnnnnggaactaaatgatcaatacccttagttacatcactcaaggaagagcaaagttcaagttcgggggtgc |
299 |
Q |
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| T |
4570664 |
taatgtattttctcttttgcttagaaaaaaaaaggaactaaatgatcaatacccttagttacatcactcaaggaagagcaaagttcaagttcgggggtgc |
4570763 |
T |
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| Q |
300 |
gataatcacaaaaatgaaggttattacctttaatttatcctcataaactgatgatgtc |
357 |
Q |
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| T |
4570764 |
gataatcacaaaaatgaaggttattacctttaatttatcctcataaactaatgatgtc |
4570821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 4570896 - 4570925
Alignment:
| Q |
317 |
aggttattacctttaatttatcctcataaa |
346 |
Q |
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| T |
4570896 |
aggttattacctttaatttatcctcataaa |
4570925 |
T |
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