View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5913-Insertion-3 (Length: 295)
Name: NF5913-Insertion-3
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913-Insertion-3 |
 | |
|
| [»] chr1 (31 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 31)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 9318229 - 9317943
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9318229 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttcatgcaaata |
9318130 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9318129 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
9318030 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattctt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9318029 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattctt |
9317943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 9320073 - 9320343
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
9320073 |
caaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaaata |
9320172 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
9320173 |
agccataccacgagccactccaagagatatctcatacattttctgataatttagagagatagtatcctctctagaggaaatatatttatcaagagagcca |
9320272 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||| |||| |||||| |||||||||| ||||||||| |
|
|
| T |
9320273 |
ttggacatgaattcataaacaagagcacgctttgatccttcaacacaaaacccaataagtcgaaccacatt |
9320343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 9350390 - 9350660
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
9350390 |
caaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaaata |
9350489 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
||| || |||||||||||||||| |||||||||||||||||||| || ||||| ||| ||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
9350490 |
agccataccacgagccactccaacagatatctcatacattttctgataacttagagagatagtatcctctctagaggaaatatatttatcaagagagcca |
9350589 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||| |||| |||||| |||||||||| ||||||||| |
|
|
| T |
9350590 |
ttggacatgaattcataaacaagagcacgctttgatccttcaacacaaaacccaataagtcaaaccacatt |
9350660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 9254967 - 9254697
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
9254967 |
caaagtctgaaactttggggttaaagttctcatcgagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatttcgcatccttgatgtaaata |
9254868 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| |||||||||| || ||||| ||| ||| ||| |||||||||| |||||||||||||| || |
|
|
| T |
9254867 |
agcaataccatgagccactccaagagatatctcgtacattttctgataacttagagagatagtatcctctctagaggaaatatatttatcaagagaacca |
9254768 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||| ||||| |||||| |||||||||| | ||||||| |
|
|
| T |
9254767 |
ttggacatgaattcataaacaagagcacgctttgatccctcaacacaaaacccaataagtcgagccacatt |
9254697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 8932272 - 8932542
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
|||||||||| ||||||| || |||| || |||||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
8932272 |
caaagtctgatactttggcgatgaagtcctggtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcatgtcacaaccttgatgcaaata |
8932371 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||| ||| |||||| |||| || ||| |||||||||| ||| ||||||||||||| |
|
|
| T |
8932372 |
agcaattccacgtgcaactccaagagatatctcgtacatttgcttataagttaaggaaatatggtcttctctagaggaaatatatctatcaagagagcca |
8932471 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||| ||||| |||||||| |
|
|
| T |
8932472 |
ttgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaacaagtcgcaccacatt |
8932542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 279
Target Start/End: Original strand, 8956226 - 8956464
Alignment:
| Q |
41 |
tcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatct |
140 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
8956226 |
tcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatct |
8956325 |
T |
|
| Q |
141 |
catacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttt |
240 |
Q |
| |
|
||||||||| ||| |||||| |||| ||| || |||||||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
8956326 |
catacatttgcttataagttaaggaaatatgatcttccctagaggaaatatatctatcaagagagccattgggcatgaaatcataaacaagagcacgttt |
8956425 |
T |
|
| Q |
241 |
tgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||| |
|
|
| T |
8956426 |
tgatccctcaatgcaaaatccaacaagtcgcaccacatt |
8956464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 8920869 - 8921150
Alignment:
| Q |
11 |
aagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataag |
110 |
Q |
| |
|
|||||||||||||||| || |||| | |||||||| |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
8920869 |
aagtctgaaactttggcgatgaagtcatggtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcatgtcacagccttgatgcaaataag |
8920968 |
T |
|
| Q |
111 |
caattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgtt |
210 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||| ||| |||||| ||| ||| ||| |||||||||| ||| ||||||||||||| || |
|
|
| T |
8920969 |
caattccacgtgcaactccaagagatatctcgtacatttgcttataagttaaggaaatgtgatcttctctagaggaaatatatctatcaagagagccatt |
8921068 |
T |
|
| Q |
211 |
gggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtatt |
292 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||| |||||| |||| ||||| |||||||| || || |||||| |
|
|
| T |
8921069 |
tggcatgaaatcataaacaagagcacgttttgatccctcaacacaaaatccaacaagtcgcaccacattggcgtgatgtatt |
8921150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 41 - 279
Target Start/End: Original strand, 8942220 - 8942458
Alignment:
| Q |
41 |
tcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatct |
140 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
8942220 |
tcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaacggcaagagatatct |
8942319 |
T |
|
| Q |
141 |
catacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttt |
240 |
Q |
| |
|
|||| |||| || |||||| |||| ||| ||| |||| || || ||||||||||||||||| ||||||||||| ||||||||||| || | ||| |
|
|
| T |
8942320 |
catatatttgtttataagttaaggaaatatgatcttctctagatgatatatatttatcaagagagccattgggcatgaaatcataaacaagagctctttt |
8942419 |
T |
|
| Q |
241 |
tgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
||||| ||||| |||||| |||||||||| |||||||| |
|
|
| T |
8942420 |
tgatccctcaacacaaaatccaataagtcgcaccacatt |
8942458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 9453763 - 9453478
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
|||| ||||||||||| || || || || || |||||||||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||| | ||| |
|
|
| T |
9453763 |
caaaatctgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacacccttgatgaagata |
9453664 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| | | ||| ||| ||||| | ||||| | |||| ||||||||||| ||||| |
|
|
| T |
9453663 |
tgaaattccacgagccactccaagagatatctcatatatttggtcgttagtaagagatataactccctctttgttgaaaatatatttatcaagtgagcct |
9453564 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattct |
294 |
Q |
| |
|
||||||||| | || |||||||| || |||||||||| || | |||||| ||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
9453563 |
ttgggcatgtactcgtaaacaagagcgcgttttgatccttcgacacaaaacccaatgagtcttaccacatttgaatggtatattct |
9453478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 9486128 - 9485842
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| |||||||| || | ||| || || |||||||| ||||| || ||||| |||||||||||||| |||||||| |||| |||||||| | ||| |
|
|
| T |
9486128 |
caaagtccgaaactttagggacaaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttgcataccacagccttgatgaagata |
9486029 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| | | ||||||| ||||| | ||||| | |||| ||||||||||| ||||| |
|
|
| T |
9486028 |
tgaaattccacgagccactccaagagatatctcatatatttggtcgttagttagagatataactccctctttgttgaaaatatatttatcaagtgagcca |
9485929 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattctt |
295 |
Q |
| |
|
||||||||| | || |||||||| |||||||| |||| || | |||||| ||||| ||||| |||||||||| ||| | ||||||| |
|
|
| T |
9485928 |
ttgggcatgtactcgtaaacaagagcacgtttcgatccttcgacacaaaacccaatgagtcttaccacatttgaatgatatattctt |
9485842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 9399803 - 9400089
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| |||||||| || || || || || |||||||||||||| || ||||| |||||||||||||| |||||||| ||||| || ||||| | ||| |
|
|
| T |
9399803 |
caaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacaaccctgatgaagata |
9399902 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| |||| | | ||||||| ||||| | ||||| | |||| ||||||||||| ||||| |
|
|
| T |
9399903 |
tgaaattccttgagccactccaagagatatctcatatatttggtcgttagttagagatataactccctctttgttgaaaatatatttatcaagtgagcca |
9400002 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattctt |
295 |
Q |
| |
|
||||||||| | || |||||||| || ||||| |||| || | |||||| || || ||||| |||||||||| ||||| ||||||| |
|
|
| T |
9400003 |
ttgggcatgtactcgtaaacaagagctcgtttcgatccttcgacacaaaaccctatgagtcttaccacatttgaatggtatattctt |
9400089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 9432776 - 9432491
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| |||||||| || || || || || || ||||||||||| || ||||| |||||||||||||| |||||||| ||||| || ||||| | ||| |
|
|
| T |
9432776 |
caaagtccgaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacaaccctgatgaagata |
9432677 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||| |||| | | || |||| ||||| | ||||| | |||| ||||||||||| ||||| |
|
|
| T |
9432676 |
tgaaattccaagagccactccaagagatatctcatatatttggtcgttagatagagatataactccctctttgttgaaaatatatttatcaagtgagcca |
9432577 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattct |
294 |
Q |
| |
|
||||||||| | || |||||||| || |||||||||| || | |||||| |||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
9432576 |
ttgggcatgtactcgtaaacaagagcgcgttttgatccttcgacacaaaacccaacgagtcttaccacatttgaatggtatattct |
9432491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 9096728 - 9096494
Alignment:
| Q |
29 |
ataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactc |
128 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| || || | ||| |||||||| || || | ||||||||| |||||||| |||| |
|
|
| T |
9096728 |
ataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatcttcatttcacatccgtggtgaagataagcaatcccacgagctactc |
9096629 |
T |
|
| Q |
129 |
caagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaac |
228 |
Q |
| |
|
||| | ||| || || ||||| ||| | ||| || || | ||||| ||| |||| ||||||||||||| || || ||||||||||||||||| |
|
|
| T |
9096628 |
caattgctatatcgtaaattttgttgtagcttaaatttatgctcccttctttggagaaaataaatttatcaagagatccattaggcatgaattcataaac |
9096529 |
T |
|
| Q |
229 |
aagtgcacgttttgatctctcaaaacaaaaaccaa |
263 |
Q |
| |
|
||| ||||||||||||| ||||| |||||| |||| |
|
|
| T |
9096528 |
aagagcacgttttgatccctcaatacaaaatccaa |
9096494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 9104910 - 9104676
Alignment:
| Q |
29 |
ataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactc |
128 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| || || | ||| |||||||| || || | ||||||||| |||||||| |||| |
|
|
| T |
9104910 |
ataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatcttcatttcacatccgtggtgaagataagcaatcccacgagctactc |
9104811 |
T |
|
| Q |
129 |
caagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaac |
228 |
Q |
| |
|
||| | ||| || || ||||| ||| | ||| || || | ||||| ||| |||| ||||||||||||| || || ||||||||||||||||| |
|
|
| T |
9104810 |
caattgctatatcgtaaattttgttgtagcttaaatttatgctcccttctttggagaaaataaatttatcaagagatccattaggcatgaattcataaac |
9104711 |
T |
|
| Q |
229 |
aagtgcacgttttgatctctcaaaacaaaaaccaa |
263 |
Q |
| |
|
||| ||||||||||||| ||||| |||||| |||| |
|
|
| T |
9104710 |
aagagcacgttttgatccctcaatacaaaatccaa |
9104676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 8874007 - 8873885
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| || ||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| || | ||| |||||||| ||||| | ||| |
|
|
| T |
8874007 |
caaagtcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatcttcatttcacatccatgatggagata |
8873908 |
T |
|
| Q |
109 |
agcaattccacgagccactccaa |
131 |
Q |
| |
|
|||||| |||||||| ||||||| |
|
|
| T |
8873907 |
agcaatcccacgagctactccaa |
8873885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 9082458 - 9082236
Alignment:
| Q |
29 |
ataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactc |
128 |
Q |
| |
|
||||||||||||||||| | ||| || |||||||||||||||||||| || || | ||| |||||||| || || | ||||||||| |||||||| |||| |
|
|
| T |
9082458 |
ataaagttctcatcaagcaagatattgtggggcttgatatcaaaatgtaaaatcttcatttcacatccatggtgaagataagcaatcccacgagctactc |
9082359 |
T |
|
| Q |
129 |
caagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaac |
228 |
Q |
| |
|
||| | ||| || || ||||| ||| | ||| || || | ||||||||| |||| ||||||||||||| || || ||||||||||||||||| |
|
|
| T |
9082358 |
caattgctatatcgtaaattttgttgtagcttaaatttatgctcccttctttagagaaaataaatttatcaagagatccattaggcatgaattcataaac |
9082259 |
T |
|
| Q |
229 |
aagtgcacgttttgatctctcaa |
251 |
Q |
| |
|
||| |||||||| |||| ||||| |
|
|
| T |
9082258 |
aagagcacgtttggatccctcaa |
9082236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 9142793 - 9142688
Alignment:
| Q |
26 |
ggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagcca |
125 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||||| || || | ||| |||||||| || || | |||||||||||| ||||| | |
|
|
| T |
9142793 |
ggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgtaatatcttcatttcacatccatggtggagataagcaattcctcgagcta |
9142694 |
T |
|
| Q |
126 |
ctccaa |
131 |
Q |
| |
|
|||||| |
|
|
| T |
9142693 |
ctccaa |
9142688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 9056749 - 9056854
Alignment:
| Q |
26 |
ggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagcca |
125 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || |||||||||||||||||||| |||| ||| |||||||| | ||| | |||| |||| |||||||| | |
|
|
| T |
9056749 |
ggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaattttcatttcacatccattatggagataatcaatcccacgagcta |
9056848 |
T |
|
| Q |
126 |
ctccaa |
131 |
Q |
| |
|
|||||| |
|
|
| T |
9056849 |
ctccaa |
9056854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 8999857 - 8999956
Alignment:
| Q |
32 |
aagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
131 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||| || || | ||| || ||||| || || | ||||||||| |||||||| ||||||| |
|
|
| T |
8999857 |
aagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaatcttcatttcgcatccatggtggagataagcaatcccacgagctactccaa |
8999956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 8964709 - 8964797
Alignment:
| Q |
35 |
ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagc |
123 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||| || | ||| || ||||| || || | ||||||||| |||||||| |
|
|
| T |
8964709 |
ttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatcttcatttcgcatccatggtgaagataagcaatcccacgagc |
8964797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 8964850 - 8964938
Alignment:
| Q |
176 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaat |
264 |
Q |
| |
|
||||||||| |||| |||||||||| || || || | |||||||||||||||||| ||||| ||||||| ||| | |||||||||||| |
|
|
| T |
8964850 |
tctttagagaaaataaatttatcaagggatccattagacatgaattcataaacaagagcacggtttgatccctcgacacaaaaaccaat |
8964938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 9384431 - 9384531
Alignment:
| Q |
44 |
agaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcat |
143 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| | |||||||| |||||||||||||||| ||| | || |||||||| | ||| |||||||| |||| |
|
|
| T |
9384431 |
agaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacatccttgatgcagatattctatcccacgagctattccgagagatatttcat |
9384530 |
T |
|
| Q |
144 |
a |
144 |
Q |
| |
|
| |
|
|
| T |
9384531 |
a |
9384531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 9000001 - 9000088
Alignment:
| Q |
176 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaa |
263 |
Q |
| |
|
||||||||| |||| |||||||||| || || || |||||||||||||||||||| |||||||| |||| ||| | |||||| |||| |
|
|
| T |
9000001 |
tctttagagaaaataaatttatcaagtgatccattaggcatgaattcataaacaagagcacgtttcgatccctcgatacaaaatccaa |
9000088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 11028538 - 11028483
Alignment:
| Q |
17 |
gaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaa |
72 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
11028538 |
gaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa |
11028483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 11011069 - 11011187
Alignment:
| Q |
17 |
gaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattc |
116 |
Q |
| |
|
|||||||| ||| | || || ||||||||||| |||||||| ||||| |||||||| || | |||| ||| | ||||| |||||||| || |||| | |
|
|
| T |
11011069 |
gaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattttcatattgcatccatgatgcaagtactcaatgc |
11011168 |
T |
|
| Q |
117 |
cacgagccactccaagaga |
135 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11011169 |
cacgagccactccaagaga |
11011187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 10974446 - 10974543
Alignment:
| Q |
38 |
tcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagaga |
135 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||| || | |||| ||| |||||||| | ||| || || |||||||||||||||| |||||||| |
|
|
| T |
10974446 |
tcatcaagaaggatggtatgaggctttatatcaaagtgtagaattttcatatcacatccattatgaaagtactcaattccacgagccaccccaagaga |
10974543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 9233963 - 9233855
Alignment:
| Q |
44 |
agaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcat |
143 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| | |||||||| ||||| |||||||||| ||| | || |||||||| | ||| ||| |||| |||| |
|
|
| T |
9233963 |
agaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactctatcccacgagctattccgagacatatttcat |
9233864 |
T |
|
| Q |
144 |
acattttct |
152 |
Q |
| |
|
| ||||||| |
|
|
| T |
9233863 |
atattttct |
9233855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 11033378 - 11033478
Alignment:
| Q |
35 |
ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaagag |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| || | |||| ||| || ||||| | |||||| || |||| || |||||||||||||||| |
|
|
| T |
11033378 |
ttctcatcaagaaggatgttatgaggctttatgtcaaagtgtagaattttcatatcgcatccattatgcaagtactcaatgcctcgagccactccaagag |
11033477 |
T |
|
| Q |
135 |
a |
135 |
Q |
| |
|
| |
|
|
| T |
11033478 |
a |
11033478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 9056899 - 9056966
Alignment:
| Q |
176 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttga |
243 |
Q |
| |
|
||||||||| |||| |||||||||||||| || || |||| |||||||||||||| || |||||||| |
|
|
| T |
9056899 |
tctttagagaaaatatatttatcaagagatccattacgcataaattcataaacaagagctcgttttga |
9056966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 9142627 - 9142561
Alignment:
| Q |
192 |
atttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaa |
258 |
Q |
| |
|
||||||||||||| || || | |||||||||||||| ||| || |||||||||| ||||| |||||| |
|
|
| T |
9142627 |
atttatcaagagatccatttgacatgaattcataaataagagcgcgttttgatccctcaatacaaaa |
9142561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 9464466 - 9464544
Alignment:
| Q |
186 |
aaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaat |
264 |
Q |
| |
|
|||||| ||| |||||||| |||| |||||||| |||||||||||||| | ||||| | |||||| |||||| ||||| |
|
|
| T |
9464466 |
aaatgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaat |
9464544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 9159763 - 9160049
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9159763 |
caaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
9159862 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9159863 |
agcaattccacgagccactccaatagatatctcatacattttcttataagttagattaataacatcatctttagaggaaatgtatttatcaagagagccg |
9159962 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggtgtattctt |
295 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9159963 |
ttgggcatgaattcataaacaagagtacattttgatctctccacacaaaatccaataagtcttaccacatttgcatggtgtattctt |
9160049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 15927135 - 15926865
Alignment:
| Q |
9 |
caaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaata |
108 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| || || |
|
|
| T |
15927135 |
caaagtcggaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatgttacatccttgatgtaagta |
15927036 |
T |
|
| Q |
109 |
agcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaaatgtatttatcaagagagccg |
208 |
Q |
| |
|
||| || |||||||| ||||||||||||||||||||||||| ||| |||||||| ||| |||| || |||| ||||| |||||||||||||| || |
|
|
| T |
15927035 |
agccataccacgagcaactccaagagatatctcatacatttgcttataagttagagagatagcatcctcgctagaagaaatatatttatcaagagaacca |
15926936 |
T |
|
| Q |
209 |
ttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatt |
279 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||| |||||| |||||||||| ||| ||||| |
|
|
| T |
15926935 |
ttgggcatgaattcataaacaagagcacgctttgatccctcaacacaaaatccaataagtcgaactacatt |
15926865 |
T |
|
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 27692617 - 27692684
Alignment:
| Q |
35 |
ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatg |
102 |
Q |
| |
|
||||| |||||||| |||||||| || || |||||||| || | ||||||||||||||| |||||||| |
|
|
| T |
27692617 |
ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg |
27692684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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