View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913-Insertion-4 (Length: 190)
Name: NF5913-Insertion-4
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913-Insertion-4 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 1e-36; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 3700819 - 3700900
Alignment:
| Q |
109 |
atggttgggccaatcatacagactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
190 |
Q |
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| T |
3700819 |
atggttgggccaatcatacaaactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
3700900 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 3719086 - 3719176
Alignment:
| Q |
100 |
ttagtttatatggttgggccaatcatacagactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
190 |
Q |
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| T |
3719086 |
ttagtttatatggttggaccaatcatacaaagtggttcaaattgtagtgaagagtcaaatgggtccatctgtttgaagtggttggagaatc |
3719176 |
T |
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Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 3707577 - 3707667
Alignment:
| Q |
100 |
ttagtttatatggttgggccaatcatacagactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
190 |
Q |
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| T |
3707577 |
ttagtttatatggttggaccaatcatacaaagtggttcaaattgtagtgaagagtcaaatgggtcaatctgtttgaagtggttggagaatc |
3707667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 3770618 - 3770528
Alignment:
| Q |
100 |
ttagtttatatggttgggccaatcatacagactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
190 |
Q |
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| T |
3770618 |
ttagtttatatggttggaccaatcatacaaagtggttcaaattgaagtgaagagtcaaatgggtcaatctgtttgaagtggttggagaatc |
3770528 |
T |
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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 3718993 - 3719036
Alignment:
| Q |
31 |
tctcttgctcatggtttcttggttaatagtttctcaaaaatgga |
74 |
Q |
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| T |
3718993 |
tctcttgctcatggtttcttggtgaatagtttctcaaaaatgga |
3719036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 3770711 - 3770668
Alignment:
| Q |
31 |
tctcttgctcatggtttcttggttaatagtttctcaaaaatgga |
74 |
Q |
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| T |
3770711 |
tctcttgctcatggtttcttggtgaatagtttctcaaaaatgga |
3770668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 3778372 - 3778329
Alignment:
| Q |
31 |
tctcttgctcatggtttcttggttaatagtttctcaaaaatgga |
74 |
Q |
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| T |
3778372 |
tctcttgctcatggtttcttggtgaatagtttctcaaaaatgga |
3778329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 3707484 - 3707527
Alignment:
| Q |
31 |
tctcttgctcatggtttcttggttaatagtttctcaaaaatgga |
74 |
Q |
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| T |
3707484 |
tctcttgctcatggtttcttggcgaatagtttctcaaaaatgga |
3707527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 3700791 - 3700824
Alignment:
| Q |
13 |
caacattgcaagaggtactctcttgctcatggtt |
46 |
Q |
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| T |
3700791 |
caacattgcaagaggtactctcttgctcatggtt |
3700824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 3778279 - 3778189
Alignment:
| Q |
100 |
ttagtttatatggttgggccaatcatacagactggttcagatagtagtgatgagtcaaatgagtccatctgtttgaagtggttggagaatc |
190 |
Q |
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| T |
3778279 |
ttagtctatttggttggaccaatcatacaaaatggttcaaaaagtattgatgagtcaaatggatcagattgtttgaaatggttggagaatc |
3778189 |
T |
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