View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5913_high_7 (Length: 414)

Name: NF5913_high_7
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5913_high_7
NF5913_high_7
[»] chr5 (4 HSPs)
chr5 (16-402)||(3014122-3014508)
chr5 (190-402)||(13887953-13888166)
chr5 (16-176)||(13887815-13887975)
chr5 (129-163)||(3013905-3013939)
[»] chr2 (4 HSPs)
chr2 (16-385)||(40912705-40913062)
chr2 (181-402)||(7565127-7565349)
chr2 (224-386)||(32652242-32652404)
chr2 (322-361)||(6356846-6356885)
[»] chr3 (3 HSPs)
chr3 (190-381)||(13007579-13007770)
chr3 (224-402)||(48154676-48154854)
chr3 (16-176)||(13007441-13007601)
[»] chr6 (3 HSPs)
chr6 (224-402)||(25441368-25441546)
chr6 (224-402)||(4488045-4488223)
chr6 (210-303)||(26820000-26820093)
[»] chr4 (3 HSPs)
chr4 (224-402)||(5915260-5915438)
chr4 (322-361)||(14246217-14246256)
chr4 (214-271)||(22722305-22722362)
[»] chr7 (1 HSPs)
chr7 (16-190)||(44064056-44064221)
[»] chr8 (1 HSPs)
chr8 (210-396)||(1872931-1873100)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 3014122 - 3014508
Alignment:
16 ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3014122 ctttgttctgaggcaagtcgattggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 3014221  T
116 aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaaagtgcttttggtaatgatagaacaa 215  Q
    |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
3014222 aaggaaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaagaaattgcttttggtaatgatagaacaa 3014321  T
216 gggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggat 315  Q
    |||||||||||||||||||||  ||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
3014322 gggaggagtgaatgatacgaacgggttcaaagcggaattgcatttcgattttaaaccgcatggaagaacatgatttcgattttgaatggaagaattggat 3014421  T
316 ttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggttaagaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||    
3014422 ttcaaatggatttcgattttgagatgaggaactcaagattttgaattggtttcaatttcgatttcgattttgaattgggttaagaat 3014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 190 - 402
Target Start/End: Original strand, 13887953 - 13888166
Alignment:
190 aagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||| ||||| |||| |||||||||||||||||    
13887953 aagtgcttttggtaatgatagaacaagggaggagtgaatgatacataccggttcaacgcggaattgcatttcgatttaaaaccgcatggaagaacatgat 13888052  T
290 ttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcga-ttttga 388  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
13888053 ttcgattttgaatggaagaattggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgatttttga 13888152  T
389 attgggttaagaat 402  Q
    ||||||||||||||    
13888153 attgggttaagaat 13888166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13887815 - 13887975
Alignment:
16 ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 115  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
13887815 ctttgttcttaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacgcgcgagaatttga 13887914  T
116 aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaa 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
13887915 aagggaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggtaatgatagaa 13887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 3013939 - 3013905
Alignment:
129 tttcgttgtagtggtgatgatgggtaagtgatttt 163  Q
    |||||||||||||||||||||||||||||| ||||    
3013939 tttcgttgtagtggtgatgatgggtaagtgctttt 3013905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 40913062 - 40912705
Alignment:
16 ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 115  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
40913062 ctttgttttgaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 40912963  T
116 aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaaagtgcttttggtaatgatagaacaa 215  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
40912962 aagggaatcgaaatttcgttgcagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaaaatagtgcttttggtaatgatagaacaa 40912863  T
216 gggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggat 315  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
40912862 gggaggagtgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattggat 40912763  T
316 ttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattt 385  Q
    |||||            ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
40912762 ttcaa------------tttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgattt 40912705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 181 - 402
Target Start/End: Original strand, 7565127 - 7565349
Alignment:
181 cgattaagaaagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaa 280  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||    
7565127 cgattaagaaagtgcttttggtaatgatataacaagggaggactgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaa 7565226  T
281 gaacatgatttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttc 380  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
7565227 gaacatgatttcgattttgaatggaagaattgaatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttc 7565326  T
381 ga-ttttgaattgggttaagaat 402  Q
    || ||||||||||||||||||||    
7565327 gatttttgaattgggttaagaat 7565349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 224 - 386
Target Start/End: Original strand, 32652242 - 32652404
Alignment:
224 tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg 323  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
32652242 tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattgaatttcaaatg 32652341  T
324 gatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgatttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
32652342 gatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgatttt 32652404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 6356846 - 6356885
Alignment:
322 tggatttcgattttgagatgaggaactcaagattttgaat 361  Q
    |||||||||| |||||||||| ||||||||||||||||||    
6356846 tggatttcgaatttgagatgaagaactcaagattttgaat 6356885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 190 - 381
Target Start/End: Original strand, 13007579 - 13007770
Alignment:
190 aagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgat 289  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||||||||| |||||||||| |||||||||||||||||    
13007579 aagtgcttttggtaatgatagaacaagggaagagtgaatgatacgaaccgattcaacgcagaattgcatttcgatttcaaaccgcatggaagaacatgat 13007678  T
290 ttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcg 381  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
13007679 ttcgattttgaatggaagaattggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcg 13007770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 224 - 402
Target Start/End: Complemental strand, 48154854 - 48154676
Alignment:
224 tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg 323  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
48154854 tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgattttgattttgaatggaagaattggatttcaaatg 48154755  T
324 gatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggttaagaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
48154754 gatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgattttgaattgggttaagaat 48154676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13007441 - 13007601
Alignment:
16 ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
13007441 ctttgttctgaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacacgcgagaatttga 13007540  T
116 aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaa 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
13007541 aagggaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggtaatgatagaa 13007601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 224 - 402
Target Start/End: Original strand, 25441368 - 25441546
Alignment:
224 tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg 323  Q
    |||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
25441368 tgaatgatacaaaccggttcaaagcggaattgcatttcgatttcaaactgcatggaagaacatgatttcgattttgaatggaagaattggatttcaaatg 25441467  T
324 gatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggttaagaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
25441468 gatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgattttgaattgggttaagaat 25441546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 224 - 402
Target Start/End: Complemental strand, 4488223 - 4488045
Alignment:
224 tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg 323  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
4488223 tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgattttgattttgaatggaagaattggatttcaaatg 4488124  T
324 gatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggttaagaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
4488123 gatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcgattttgaattgggttaagaat 4488045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 26820093 - 26820000
Alignment:
210 gaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatg 303  Q
    |||||||||||||||||||||||| ||  ||||||| ||||||||| |||| |||||||||| ||||||||||| ||| ||| |||||||||||    
26820093 gaacaagggaggagtgaatgatacaaactggttcaaagcggaattgtatttcgatttcaaaccgcatggaagaatatgtttttgattttgaatg 26820000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 224 - 402
Target Start/End: Complemental strand, 5915438 - 5915260
Alignment:
224 tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg 323  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
5915438 tgaatgatacgaagcggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattggatttcaaatg 5915339  T
324 gatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggttaagaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
5915338 gatttcgattttgagatgaggaactcaagattttgaatggatttcaatttcgatttcggttttgaattgggttaagaat 5915260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 14246217 - 14246256
Alignment:
322 tggatttcgattttgagatgaggaactcaagattttgaat 361  Q
    |||||||||| |||||||||| ||||||||||||||||||    
14246217 tggatttcgaatttgagatgaagaactcaagattttgaat 14246256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 22722362 - 22722305
Alignment:
214 aagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaac 271  Q
    ||||||||||||||||||| |||| ||||||| | ||||||| ||||  |||||||||    
22722362 aagggaggagtgaatgatatgaattggttcaaagtggaattggatttcaatttcaaac 22722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 44064221 - 44064056
Alignment:
16 ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga 115  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||    
44064221 ctttgttctgaggcaagtcgattggtaaacttgtgttgatcggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttga 44064122  T
116 aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaa 190  Q
    |||||   |||||||||||        ||||| |||| ||||| |||||||||||||||||||||||||||||||    
44064121 aaggggttcgaaatttcgt--------tgatg-tggggaagtgtttttggttatgatagaaaaagcgattaagaa 44064056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 396
Target Start/End: Complemental strand, 1873100 - 1872931
Alignment:
210 gaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaa 309  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||    
1873100 gaacaagggaggagtgaatcatacgaactggttcaaagcggaattggatttcgatttcaaactgcatggaagaacatgttttcgattttgaatggaagaa 1873001  T
310 ttggatttcaaatggatttcgattttgagatgaggaactcaagattttgaatggatttcaattttgatttcgattttgaattgggtt 396  Q
        || ||        |||||||||||||||| |||||||| ||||||||||||||||      ||||||||||||||||||||||    
1873000 ---catgtc--------ttcgattttgagatgatgaactcaatattttgaatggatttc------gatttcgattttgaattgggtt 1872931  T

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