View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913_low_12 (Length: 239)
Name: NF5913_low_12
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 53016964 - 53016740
Alignment:
| Q |
1 |
ccaatatcccagcgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttcca |
100 |
Q |
| |
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||||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||| |
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| T |
53016964 |
ccaatatcccaacgcatt-gcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttcca |
53016866 |
T |
|
| Q |
101 |
ctcctctctttactgaccccgatgtcgacctttttcctagtgacacacatgcaggttctgagacatatgcaggttcttcgagtgagcttccaaccccatt |
200 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | || |
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| T |
53016865 |
ctcctctctttactaaccctgatgttgacctttttcctagtgacacacatgcaggttcttagacatatgcatgttcttctagtgagcttccaacctc-tt |
53016767 |
T |
|
| Q |
201 |
ctgatgttcaatccacttctaatgatg |
227 |
Q |
| |
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||||||||||| ||||| || |||||| |
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| T |
53016766 |
ctgatgttcaacccactcctgatgatg |
53016740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5241691 - 5241476
Alignment:
| Q |
1 |
ccaatatcccagcgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttcca |
100 |
Q |
| |
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|||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||| |
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| T |
5241691 |
ccaatatcgcaacgcattcgcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttcca |
5241592 |
T |
|
| Q |
101 |
ctcctctctttactgaccccgatgtcgacctttttcctagtgacacacatgcaggttctgagacatatgcaggttcttcgagtgagcttccaaccccatt |
200 |
Q |
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|||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| | || |
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| T |
5241591 |
ctcctctctttactaaccctgatgttgacctttttcctagtgacacgcatgcaggttctaagacatatgcaggttcttctagtgagcttccaacctc-tt |
5241493 |
T |
|
| Q |
201 |
ctgatgttcaatccact |
217 |
Q |
| |
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| ||||||||| ||||| |
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| T |
5241492 |
ccgatgttcaacccact |
5241476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 17451414 - 17451560
Alignment:
| Q |
13 |
cgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttccactcctctcttta |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||| || || | || |||||||||||| | |||| |
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| T |
17451414 |
cgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttattta |
17451513 |
T |
|
| Q |
113 |
ctgaccccgatgtcgacctttttcctagtgacacacatgcaggttct |
159 |
Q |
| |
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|| |||| ||||| ||| |||| |||||||||| ||||||||||| |
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|
| T |
17451514 |
ctaaccctgatgttgactattttaatagtgacacatatgcaggttct |
17451560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 14826128 - 14826235
Alignment:
| Q |
4 |
atatcccagcgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttccactc |
103 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||| ||| | |||||| |||| | |
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| T |
14826128 |
atatcccaatgcattcgtatttctcgtcatgttgtcttttgggaacacataatgttctcttctttgtcaaagtttacgtcaatcccatctactaccaccc |
14826227 |
T |
|
| Q |
104 |
ctctcttt |
111 |
Q |
| |
|
|||||||| |
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|
| T |
14826228 |
ctctcttt |
14826235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20669894 - 20669679
Alignment:
| Q |
1 |
ccaatatcccagcgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttcca |
100 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| | | |
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| T |
20669894 |
ccaatatctcagcgcattcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctata |
20669795 |
T |
|
| Q |
101 |
ctcctctctttactgaccccgatgtcgacctttttcctagtgacacacatgcaggttctgagacatatgcaggttcttcgagtgagcttccaaccccatt |
200 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| || || |
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| T |
20669794 |
ctcctctctttactaaccctgatgtcgatttttttcctagtgacaaacatgcaggttctgagacatatgcaggttcttctagtgagtttccaacacc-tt |
20669696 |
T |
|
| Q |
201 |
ctgatgttcaatccact |
217 |
Q |
| |
|
| ||||||||||||||| |
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| T |
20669695 |
ccgatgttcaatccact |
20669679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 29991210 - 29991366
Alignment:
| Q |
1 |
ccaatatcccagcgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
29991210 |
ccaatatcccagcgcattcgcacctctcgtcatgttatcttttgcgaacatataatgttctcttccttatcaaagtttaactcgatcctttctacttcca |
29991309 |
T |
|
| Q |
101 |
ctcctctctttactgaccccgatgtcgacctttttcctagtgacacacatgcaggtt |
157 |
Q |
| |
|
||||| ||||||| ||| |||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
29991310 |
ctcctttctttacgaacctcgatgttgacctttttcctagtaacacacatgcaggtt |
29991366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 16503279 - 16503458
Alignment:
| Q |
31 |
catgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttccactcctctctttactgaccccgatgtcgacc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||| ||||||||||||||| |||| ||| |||| |
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| T |
16503279 |
catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaattccgtctacttcgactcctctctttactaaccctgattctgacc |
16503378 |
T |
|
| Q |
131 |
tttttcctagtgacacacatgcaggttctgagacatatgcaggttcttcgagtgagcttccaaccccattctgatgttcaa |
211 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
16503379 |
tttttcccattgacacacatgcaggttctaagacatatgcagattcttctagtgagcttccaacctc-ttctgatgttcaa |
16503458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 24432365 - 24432511
Alignment:
| Q |
13 |
cgcattcgcacctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttccactcctctcttta |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||| || || | || |||||||||||| | |||| |
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|
| T |
24432365 |
cgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttattta |
24432464 |
T |
|
| Q |
113 |
ctgaccccgatgtcgacctttttcctagtgacacacatgcaggttct |
159 |
Q |
| |
|
|| |||| ||||| ||| |||| |||||||||| ||||||||||| |
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|
| T |
24432465 |
ctaaccctgatgttgactattttaatagtgacacatatgcaggttct |
24432511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 29991372 - 29991413
Alignment:
| Q |
181 |
agtgagcttccaaccccattctgatgttcaatccacttctaat |
223 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
29991372 |
agtgagcttccaacccc-ttccgatgttcaatccacttctaat |
29991413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 12546372 - 12546558
Alignment:
| Q |
25 |
tctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcgatctcttctacttccactcctctctttactgaccccgatg |
124 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||| || | || |||||||||||||| |||||| ||||||||| |
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|
| T |
12546372 |
tctcgacatgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaattccctcaacttccactcctctttttactaaccccgatg |
12546471 |
T |
|
| Q |
125 |
tcgacctttttcctagtgacacacatgcaggttctgagacatatgcaggttcttcgagtgagcttccaaccccattctgatgttcaat |
212 |
Q |
| |
|
||| | ||||||||||||||| ||||||||| ||||| ||||||| ||||||| |||||| ||||||| | ||| |||||||||| |
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|
| T |
12546472 |
tcggctattttcctagtgacacgtatgcaggttttgagatatatgcatgttcttctagtgagtatccaacctc-ttccgatgttcaat |
12546558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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