View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5913_low_13 (Length: 238)
Name: NF5913_low_13
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45371408 - 45371628
Alignment:
| Q |
1 |
caaaatgagtgtgtaaaggcataagtttggaaatagaattagattctctgctggatatgcgtttaaagatctcgattgtccgatctcaaatcaatggtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45371408 |
caaaatgagtgtgtaaaggcataagtttggaaatagaattagattctctgctgtatatgcatttaaagatctcgattgtctgatctcaaatcaatggtca |
45371507 |
T |
|
| Q |
101 |
aaataatttggaattaaattgctgattgtgtaatctggtgccaccccttctcaaatcattacctgaaattgatcaccgcttgttactggtgagatatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45371508 |
aaataatttggaattaaattgctgattgtgtaatctggtgccaccccttctcaaatcattacctgaaattgatcaccgcttgtaactggagagatatttt |
45371607 |
T |
|
| Q |
201 |
tagagcagggaatctgagtcc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45371608 |
tagagcagggaatctgagtcc |
45371628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University