View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913_low_16 (Length: 216)
Name: NF5913_low_16
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 36863987 - 36864176
Alignment:
| Q |
13 |
catcaactcaaagaacaaaacaatctcattcaccagctccaaaatctttccctgaaacgtgacaaggtaactcggtgcttcttcagaattattacactat |
112 |
Q |
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| T |
36863987 |
catcaactcaaagaacaaaacaatctcattcaccagctccaaaatctttccctgaaacgtgacaaggtaactaagtgcttctttagaattattacactat |
36864086 |
T |
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| Q |
113 |
tgttgatgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttg |
202 |
Q |
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| T |
36864087 |
tgttgatgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttg |
36864176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 12281335 - 12281413
Alignment:
| Q |
119 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggac |
197 |
Q |
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| T |
12281335 |
tgattatttccttcttgcatagtggtttgactcttacctctaatgggttgatactgttgtcattcatgacacactggac |
12281413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 35025783 - 35025709
Alignment:
| Q |
128 |
ccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttg |
202 |
Q |
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| T |
35025783 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
35025709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 37840951 - 37841034
Alignment:
| Q |
119 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttg |
202 |
Q |
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| T |
37840951 |
tgattgtttccttcttgcatggtggttttgcacttaccactgatgggttgactctgttgtcactcttgactcactggacctttg |
37841034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 37835329 - 37835407
Alignment:
| Q |
119 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggac |
197 |
Q |
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| T |
37835329 |
tgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
37835407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 37821242 - 37821308
Alignment:
| Q |
19 |
ctcaaagaacaaaacaatctcattcacca---gctccaaaatctttccctgaaacgtgacaaggtaa |
82 |
Q |
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| T |
37821242 |
ctcaaagaacaaaaaaatctcattcatcatcagctccaaaatctttccctcaaacttgacaaggtaa |
37821308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 37821366 - 37821469
Alignment:
| Q |
99 |
aattattacactattgttgatgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacc |
198 |
Q |
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|||||| ||| | |||||| ||||||||||||||| |||||| | | |||||| |||| |||| ||||||||| ||||||||||||| | |||||| |
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| T |
37821366 |
aattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctgatggtttgactttgatgtcactcttgacacgttggacc |
37821465 |
T |
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| Q |
199 |
tttg |
202 |
Q |
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|||| |
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| T |
37821466 |
tttg |
37821469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 37829608 - 37829711
Alignment:
| Q |
99 |
aattattacactattgttgatgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacc |
198 |
Q |
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|||||| ||| | |||||| ||||||||||||||| |||||| | | |||||| |||| |||| ||||||||| ||||||||||||| | |||||| |
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| T |
37829608 |
aattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctgatggtttgactttgatgtcactcttgacacgttggacc |
37829707 |
T |
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| Q |
199 |
tttg |
202 |
Q |
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|||| |
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| T |
37829708 |
tttg |
37829711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 37829485 - 37829550
Alignment:
| Q |
19 |
ctcaaagaacaaaacaatctcattcacca---gctccaaaatctttccctgaaacgtgacaaggtaa |
82 |
Q |
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|||||||||||||| ||||||||||| || |||||| ||||||||||| |||| ||||||||||| |
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| T |
37829485 |
ctcaaagaacaaaa-aatctcattcatcatcagctccataatctttccctcaaacttgacaaggtaa |
37829550 |
T |
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