View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5913_low_2 (Length: 643)
Name: NF5913_low_2
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Original strand, 51022859 - 51023461
Alignment:
| Q |
19 |
aaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022859 |
aaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaag |
51022958 |
T |
|
| Q |
119 |
gttctcgtcaacattgagcagcagagtcctgatattgctcagggtgtacatggtcatcttacaaaaagacccgaggagattggtgctggtgatcagggtc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
51022959 |
gttctcgtcaacattgagcagcagagtcctgatattgctcagggtgtacatggtcatcttacaaaaagacctgaggagattggtgctggtgatcagggtc |
51023058 |
T |
|
| Q |
219 |
acatgtttggatatgccaccgatgagactcctgagttgatgcctttgagccatgttctttcaaccaagcttggtgctcgtctcactgaggttcgcaagaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51023059 |
acatgtttggatatgccaccgatgagactcctgagttgatgcctttgagccatgttcttgcaaccaagcttggtgctcgtctcactgaggttcgcaagaa |
51023158 |
T |
|
| Q |
319 |
tggtacatgcccttggttgagacctgatggaaagactcaagtcactgttgagtattacaatgacaatggtgctatggttcctgttcgtgtccacactgtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51023159 |
tggtacatgcccttggttgagacctgatggtaagactcaagtcactgttgagtattacaatgacaatggtgctatggttcctgttcgtgtccacactgtg |
51023258 |
T |
|
| Q |
419 |
ctcatctctactcaacatgatgagactgttaccaatgatgaaattgctgctgatctcaaagagcatgttatcaagcccgtgattcctgacaagtaccttg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51023259 |
ctcatctctactcaacatgatgagactgttaccaatgatgaaattgctgctgatctcaaagagcatgttatcaagcccgtgattcctgacaagtaccttg |
51023358 |
T |
|
| Q |
519 |
attccaagaccatttttcacttgaacccttctggccgttttgtcattggaggtcctcacggtgatgctggtctcactggtaggaagatcattattgacac |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51023359 |
attccaagaccatttttcacttgaacccttctggccgttttgtcattggaggtcctcacggtgatgctggtctcactggtaggaagatcatcattgacac |
51023458 |
T |
|
| Q |
619 |
tta |
621 |
Q |
| |
|
||| |
|
|
| T |
51023459 |
tta |
51023461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 32 - 591
Target Start/End: Complemental strand, 20526054 - 20525495
Alignment:
| Q |
32 |
gttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaaggttctcgtcaaca |
131 |
Q |
| |
|
|||||||| || || ||||| ||| | || ||||| || || || |||||||| |||||||| ||||||||||||||||||||||| || || ||||||| |
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|
| T |
20526054 |
gttgactacgaaaagattgtccgtaaaacatgcaggaacataggttttgtttcagatgatgttggtcttgatgctgacaactgcaaagtccttgtcaaca |
20525955 |
T |
|
| Q |
132 |
ttgagcagcagagtcctgatattgctcagggtgtacatggtcatcttacaaaaagacccgaggagattggtgctggtgatcagggtcacatgtttggata |
231 |
Q |
| |
|
|||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || |
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|
| T |
20525954 |
ttgaacaacagagtcctgatattgctcaaggtgttcatggccatcttacaaaaagacctgaggaaattggtgctggtgatcaaggtcacatgttcgggta |
20525855 |
T |
|
| Q |
232 |
tgccaccgatgagactcctgagttgatgcctttgagccatgttctttcaaccaagcttggtgctcgtctcactgaggttcgcaagaatggtacatgccct |
331 |
Q |
| |
|
||| |||||||| || || ||| | |||||||| | |||||||||| |||||||| | || ||| |||||||| ||||||||||| || ||||||||| |
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|
| T |
20525854 |
tgctaccgatgaaacacccgagcttatgcctttaacccatgttcttgcaaccaagttaggagctaagctcactgaagttcgcaagaacggaacatgccct |
20525755 |
T |
|
| Q |
332 |
tggttgagacctgatggaaagactcaagtcactgttgagtattacaatgacaatggtgctatggttcctgttcgtgtccacactgtgctcatctctactc |
431 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| || || |||||||| | |||||||| ||||| || ||||| || | |
|
|
| T |
20525754 |
tggttgagacctgatggaaagacccaagtcactattgagtatttcaatgacaagggcgccatggttccgatccgtgtccatactgtccttatctcaacac |
20525655 |
T |
|
| Q |
432 |
aacatgatgagactgttaccaatgatgaaattgctgctgatctcaaagagcatgttatcaagcccgtgattcctgacaagtaccttgattccaagaccat |
531 |
Q |
| |
|
| || ||||| ||||| |||||||| |||||||| |||||| | || || ||||| |||||||||||||| || || |||||||||||| || ||||| |
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|
| T |
20525654 |
agcacgatgaaactgtcaccaatgacgaaattgcagctgatttgaaggaacatgtgatcaagcccgtgatcccagagaagtaccttgatgagaaaaccat |
20525555 |
T |
|
| Q |
532 |
ttttcacttgaacccttctggccgttttgtcattggaggtcctcacggtgatgctggtct |
591 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
20525554 |
cttccacttgaacccttcaggccgtttcgtcatcggtggtcctcacggtgacgctggtct |
20525495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 621
Target Start/End: Original strand, 45207855 - 45208457
Alignment:
| Q |
19 |
aaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaag |
118 |
Q |
| |
|
||||||||| || || ||||||||||| || || |||||||| ||| | | ||||| || | ||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
45207855 |
aaccaaggccaatgtagactatgagaagatcgttcgtgacacatgccgcaccattggattcatctctgatgatgttggtcttgatgccgacaaatgcaag |
45207954 |
T |
|
| Q |
119 |
gttctcgtcaacattgagcagcagagtcctgatattgctcagggtgtacatggtcatcttacaaaaagacccgaggagattggtgctggtgatcagggtc |
218 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||| || || || | || || | || |||||| ||||||||||||| ||||||| |
|
|
| T |
45207955 |
gtcttggttaacattgagcagcagagtcctgatattgctcagggtgttcacggacacttcaccaagcgcccggaggaggttggtgctggtgaccagggtc |
45208054 |
T |
|
| Q |
219 |
acatgtttggatatgccaccgatgagactcctgagttgatgcctttgagccatgttctttcaaccaagcttggtgctcgtctcactgaggttcgcaagaa |
318 |
Q |
| |
|
|||||||||| ||||| || ||||| || ||||| ||||||||||||| |||||| ||| ||||||| |||||| ||||||| || |||||| | ||||| |
|
|
| T |
45208055 |
acatgtttggctatgctactgatgaaacccctgaattgatgcctttgacccatgtccttgcaaccaaacttggttctcgtcttaccgaggttaggaagaa |
45208154 |
T |
|
| Q |
319 |
tggtacatgcccttggttgagacctgatggaaagactcaagtcactgttgagtattacaatgacaatggtgctatggttcctgttcgtgtccacactgtg |
418 |
Q |
| |
|
|||||| ||| |||||||||||||||| || ||||| ||||| || | ||||| |||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
45208155 |
tggtacctgcgcttggttgagacctgacggcaagacacaagttaccatcgagtactacaatgagaacggtgctatggttccagttcgtgtccacactgtc |
45208254 |
T |
|
| Q |
419 |
ctcatctctactcaacatgatgagactgttaccaatgatgaaattgctgctgatctcaaagagcatgttatcaagcccgtgattcctgacaagtaccttg |
518 |
Q |
| |
|
||||| ||||||||||| || |||||||| | || || | |||||||||||||| || || |||||||||||||| || ||||| || |||||| | | |
|
|
| T |
45208255 |
ctcatttctactcaacacgacgagactgtcagtaacgaccagattgctgctgatcttaaggaacatgttatcaagcctgttattcccgagaagtacttgg |
45208354 |
T |
|
| Q |
519 |
attccaagaccatttttcacttgaacccttctggccgttttgtcattggaggtcctcacggtgatgctggtctcactggtaggaagatcattattgacac |
618 |
Q |
| |
|
|| ||||| || || ||| | ||||||||||| || ||||||||||| ||||| || |||||||| |||||||| || || ||||| || ||||| || |
|
|
| T |
45208355 |
atgagaagacaatcttccaccttaacccttctggacgctttgtcattggtggtccccatggtgatgccggtctcaccggaagaaagattataattgatac |
45208454 |
T |
|
| Q |
619 |
tta |
621 |
Q |
| |
|
||| |
|
|
| T |
45208455 |
tta |
45208457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 19 - 618
Target Start/End: Original strand, 41212955 - 41213554
Alignment:
| Q |
19 |
aaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaag |
118 |
Q |
| |
|
||||||||||| || ||||||||||||| || || ||||| |||||| ||||| || || || | |||||| |||||||||||||| || ||||| |
|
|
| T |
41212955 |
aaccaaggctaccgtgaactatgagaaaatagttcgagacacttgcagaggaattggattcgtatcagctgatgttggtcttgatgctgataattgcaaa |
41213054 |
T |
|
| Q |
119 |
gttctcgtcaacattgagcagcagagtcctgatattgctcagggtgtacatggtcatcttacaaaaagacccgaggagattggtgctggtgatcagggtc |
218 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| ||||| || || |||||||| | || |||| ||| ||||| |||||||||||||| || |||| |
|
|
| T |
41213055 |
gttcttgtcaacattgaacaacagagtcctgatatcgctcaaggagttcatggtcacttgaccaaaaaaccagaggaaattggtgctggtgaccaaggtc |
41213154 |
T |
|
| Q |
219 |
acatgtttggatatgccaccgatgagactcctgagttgatgcctttgagccatgttctttcaaccaagcttggtgctcgtctcactgaggttcgcaagaa |
318 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||||| | ||||| | | ||||| ||| | || || |||||||| |||||||| ||| | ||||| |
|
|
| T |
41213155 |
acatgtttggctatgccacagatgaaacacctgagctaatgccacttactcatgtgcttgctactaaacttggtgcaaagctcactgaagttagaaagaa |
41213254 |
T |
|
| Q |
319 |
tggtacatgcccttggttgagacctgatggaaagactcaagtcactgttgagtattacaatgacaatggtgctatggttcctgttcgtgtccacactgtg |
418 |
Q |
| |
|
|||||| | ||| | || |||||||| || || ||||| ||||||||||| | ||||| || || || ||||| || | ||||| ||||| || |
|
|
| T |
41213255 |
caaaacatgcgcatggcttaggcctgatggtaaaacccaagttactgttgagtaccagaatgataacggagccatggtcccaatccgtgtgcacaccgtc |
41213354 |
T |
|
| Q |
419 |
ctcatctctactcaacatgatgagactgttaccaatgatgaaattgctgctgatctcaaagagcatgttatcaagcccgtgattcctgacaagtaccttg |
518 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| || ||||| |||||||||| ||| | ||||||||||| || || || || || || | || ||||||| |
|
|
| T |
41213355 |
ctcatctcaactcagcacgatgaaactgtcacaaatgaaaaaattgctgcagatttaaaagagcatgtgattaaacctgttatcccagcaaaataccttg |
41213454 |
T |
|
| Q |
519 |
attccaagaccatttttcacttgaacccttctggccgttttgtcattggaggtcctcacggtgatgctggtctcactggtaggaagatcattattgacac |
618 |
Q |
| |
|
|| |||||| || || || | || || ||||| || ||||| ||||| || ||||| || ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
41213455 |
atgacaagactatcttccatctcaatccatctggtcggtttgttattggtggacctcatggagatgcaggactcactggtaggaagatcattattgacac |
41213554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 27718960 - 27718727
Alignment:
| Q |
19 |
aaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgtaggtcttgatgctgacaactgcaag |
118 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || |||||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
27718960 |
aaccaaggcaaaggtggactatgagaaaatagttcgtgacacttgcaggagtattgggtttgtgtctgctgatgttggtcttgatgctgacaaatgcaat |
27718861 |
T |
|
| Q |
119 |
gttctcgtcaacattgagcagcagagtcctgatattgctcagggtgtacatggtcatctta-caaaaagacccgaggagattggtgctggtgatcagggt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| || || || ||||| | | ||| ||| || ||||| ||||| ||||||||||| ||| |
|
|
| T |
27718860 |
gttctcgtcaacattgagcaacagagccctgatattgctcaaggagttcacggtcacttgagcaagaag-cctgaggaaattggagctggtgatcaaggt |
27718762 |
T |
|
| Q |
218 |
cacatgtttggatatgccaccgatgagactcctga |
252 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||| |
|
|
| T |
27718761 |
cacatgtttggctatgctactgatgaaacacctga |
27718727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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