View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913_low_3 (Length: 567)
Name: NF5913_low_3
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 170 - 524
Target Start/End: Original strand, 6679030 - 6679384
Alignment:
| Q |
170 |
tgcataagaacattttcttggattttacaaaatgaagaacacaatgtcaaacataccagcaagcataaacaagcatttttattttcttagctttccttcc |
269 |
Q |
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| T |
6679030 |
tgcataagaacattttcttggcttttacaaaatgaagaacacaatgtcaaacatatcagcaagcataaacaagcatttttatgttcttagctttccttcc |
6679129 |
T |
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| Q |
270 |
tttaacaagttgctcaagtctcaatacactagagtgcctaaagataccaccatcacaatttcttcattcagtgaaaatgatcaaagacaaggtgcatgat |
369 |
Q |
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| T |
6679130 |
tttaacaagttgctcaagtctcaatacactagagtgcctaaagataccaccatcacaatttcttcattcagtgaaaatgatcaaagacaaggtgcatgat |
6679229 |
T |
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| Q |
370 |
cttacatcaattctacaatttgagctgaagaccggtgatggcattggtgactttcgtctctcaaacaccatcactatatgtttggagcttctggaaatgt |
469 |
Q |
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| T |
6679230 |
cttacatcaattctacaatttgagttgaagaccggtgatggcattggtggctttcgtctctcaaacaccatcattacatgtttggagcttctagaaatgt |
6679329 |
T |
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| Q |
470 |
ccttgaagagcttcattggtgtgcatctaccgtgaagaatcccaaaggtatcaat |
524 |
Q |
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| T |
6679330 |
ccttggagagcttcattggtgtgcatctgccgtgaagaatcccagaggtatcaat |
6679384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 252 - 551
Target Start/End: Complemental strand, 6679720 - 6679431
Alignment:
| Q |
252 |
tttcttagctttccttcctttaacaagttgctcaagtctcaatacactagagtgcctaaagataccaccatcacaatttcttcattcagtgaaaatgatc |
351 |
Q |
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| T |
6679720 |
tttcttagctttccttcctttaacaagttgctcaagtctcaatacactagagtgtctaaagataccaccatcacaatttcttcattcagtgaaaatgatc |
6679621 |
T |
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| Q |
352 |
aaagacaaggtgcatgatcttacatcaattctacaatttgagctgaagaccggtgatggcattggtgactttcgtctctcaaacaccatcactatatgtt |
451 |
Q |
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| T |
6679620 |
aaagacaaggtgcat-atcttacatcaattctacaatttgagttgaagac---------cattggtggctttcgtctctcaaacaccaacgctacatgtt |
6679531 |
T |
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| Q |
452 |
tggagcttctggaaatgtccttgaagagcttcattggtgtgcatctaccgtgaagaatcccaaaggtatcaatatttaaaagtttacactaattttattt |
551 |
Q |
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| T |
6679530 |
tggagcttctagaaatgtccttgaagagcttcattggcgtgcatctgccgtgaagaatcccagaggtatcaatatttaaaagtttacactaattttattt |
6679431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 365 - 547
Target Start/End: Original strand, 6848777 - 6848960
Alignment:
| Q |
365 |
atgatcttacatcaattctacaatttgagctgaagaccggtgatggcattggtgactttcgtctctcaaacaccatcactatatgtttggagcttctgga |
464 |
Q |
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||||||||||||||||||||||||||||| |||||| | |||||||||||| | |||||| ||||||||||||||| ||| ||||||||||||||| || |
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| T |
6848777 |
atgatcttacatcaattctacaatttgagttgaagattgttgatggcattggcggctttcgcctctcaaacaccatcgctacatgtttggagcttctaga |
6848876 |
T |
|
| Q |
465 |
aatgtcc-ttgaagagcttcattggtgtgcatctaccgtgaagaatcccaaaggtatcaatatttaaaagtttacactaatttt |
547 |
Q |
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| T |
6848877 |
aatttccgttgaagagcttcaagggtgtgcatctgctatgaaaaatctcaaaggtatcaatgtttaaaattttacactattttt |
6848960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 6678816 - 6678905
Alignment:
| Q |
13 |
aatatattatcctaacttacaacttggaaggatcaagaaaaattgcaatattcctaattgcaacatttggtaatatttcctataaggctc |
102 |
Q |
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| T |
6678816 |
aatatattatcctaacttacaacttgaaaggatcaagaaaaattgcaatattcgtaattgcaacatttggtaatatttgctataaggctc |
6678905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 6679838 - 6679742
Alignment:
| Q |
170 |
tgcataagaacattttcttggattttacaaaatgaagaacacaatgtcaaacataccagcaagcata--aacaagcatttttattttcttagctttc |
264 |
Q |
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| T |
6679838 |
tgcataagaacattttcttggcttttataaaatgaagaacacaatgtcaaacataccagcaaacataagaacaagcatttttatttttttagctttc |
6679742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 6848432 - 6848516
Alignment:
| Q |
15 |
tatattatcctaacttacaacttggaaggatcaagaaaaattgcaatattcctaattgcaacatttggtaatatttcctataagg |
99 |
Q |
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| T |
6848432 |
tatattatcataacttacaatttggaaggatcaagaaaaaatgcaatatccctaattgcaacatttggtaatattttctataagg |
6848516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 174 - 305
Target Start/End: Original strand, 6848648 - 6848775
Alignment:
| Q |
174 |
taagaacattttcttggattttacaaaatgaagaacacaatgtcaaacataccagcaagcataaacaagcatttttattttcttagctttccttccttta |
273 |
Q |
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||||||||| |||||| |||||||||||||||| ||| ||| |||| |||||| |||||| | | ||||||||||||||| ||||||||||||||| |
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| T |
6848648 |
taagaacatggtcttggcttttacaaaatgaagagcacgatgccaaagataccaccaagca----ctatcatttttattttcttggctttccttccttta |
6848743 |
T |
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| Q |
274 |
acaagttgctcaagtctcaatacactagagtg |
305 |
Q |
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| T |
6848744 |
actggttgctctagtctcagtagactagagtg |
6848775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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