View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913_low_4 (Length: 440)
Name: NF5913_low_4
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 9730975 - 9730566
Alignment:
| Q |
18 |
attactgtctgattatttgatcagattttctggcactattgttggggttggtgatgtttctgcaggatggtcaaattctcactggagatcattgaaggtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9730975 |
attactgtctgattatttgatcagattttctggcactattgttggggttggtgatgtttctgcaggatggtcaaattctcactggagatcattgaaggtt |
9730876 |
T |
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| Q |
118 |
gatctaaatttcttatctttatttcctttttctgttaattgtatacataccatttgagcatgtaaaactttttgccacttaggttcaatgggatgaagca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9730875 |
gatctaaatttcttatctttatttcctttttctgttaattgtatacataccatttgagcatgtaaaactttttgccacttaggttcaatgggatgaagca |
9730776 |
T |
|
| Q |
218 |
gcaacaattccaagaccagaaagagtttcttcatgggagatagaaccttttatagcttctcctactttgaatgtcactcaaacatcagtcaaaagcaaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9730775 |
gcaacaattccaagaccagaaagagtttcttcatgggagatagaaccttttatagcttctcctactttgaatgtcgctcaaacatcagtcaaaagcaaaa |
9730676 |
T |
|
| Q |
318 |
gatctaggcctgccgatgtttcatcttgcggtgcgaaaacattattgacaatagttctctcaatgaatattttttagtatattagttgatatgttagtat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9730675 |
gatctaggcctgccgatgtttcatcttgcggtgcgaaaacattattgacaatagttctctcaatgaatattttttagtatattagttgatatgttagtat |
9730576 |
T |
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| Q |
418 |
tttctcgttc |
427 |
Q |
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|||||||||| |
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| T |
9730575 |
tttctcgttc |
9730566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 29564410 - 29564438
Alignment:
| Q |
392 |
tagtatattagttgatatgttagtatttt |
420 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29564410 |
tagtatattagttgatatgttagtatttt |
29564438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 26533872 - 26533840
Alignment:
| Q |
391 |
ttagtatattagttgatatgttagtattttctc |
423 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
26533872 |
ttagtatattagttgttatgttagtattttctc |
26533840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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