View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5913_low_6 (Length: 425)
Name: NF5913_low_6
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 3014122 - 3014457
Alignment:
| Q |
16 |
ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014122 |
ctttgttctgaggcaagtcgattggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
3014221 |
T |
|
| Q |
116 |
aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaaagtgcttttggtaatgatagaacaa |
215 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3014222 |
aaggaaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaagaaattgcttttggtaatgatagaacaa |
3014321 |
T |
|
| Q |
216 |
gggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggat |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3014322 |
gggaggagtgaatgatacgaacgggttcaaagcggaattgcatttcgattttaaaccgcatggaagaacatgatttcgattttgaatggaagaattggat |
3014421 |
T |
|
| Q |
316 |
ttcaaatggatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014422 |
ttcaaatggatttcgattttgagatgaggaactcaa |
3014457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 351
Target Start/End: Original strand, 13887953 - 13888114
Alignment:
| Q |
190 |
aagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
13887953 |
aagtgcttttggtaatgatagaacaagggaggagtgaatgatacataccggttcaacgcggaattgcatttcgatttaaaaccgcatggaagaacatgat |
13888052 |
T |
|
| Q |
290 |
ttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888053 |
ttcgattttgaatggaagaattggatttcaaatggatttcgattttgagatgaggaactcaa |
13888114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13887815 - 13887975
Alignment:
| Q |
16 |
ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
115 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13887815 |
ctttgttcttaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacgcgcgagaatttga |
13887914 |
T |
|
| Q |
116 |
aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaa |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
13887915 |
aagggaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggtaatgatagaa |
13887975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 3013939 - 3013905
Alignment:
| Q |
129 |
tttcgttgtagtggtgatgatgggtaagtgatttt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
3013939 |
tttcgttgtagtggtgatgatgggtaagtgctttt |
3013905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 40913062 - 40912758
Alignment:
| Q |
16 |
ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
115 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40913062 |
ctttgttttgaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
40912963 |
T |
|
| Q |
116 |
aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaaagtgcttttggtaatgatagaacaa |
215 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
40912962 |
aagggaatcgaaatttcgttgcagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaaaatagtgcttttggtaatgatagaacaa |
40912863 |
T |
|
| Q |
216 |
gggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggat |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40912862 |
gggaggagtgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattggat |
40912763 |
T |
|
| Q |
316 |
ttcaa |
320 |
Q |
| |
|
||||| |
|
|
| T |
40912762 |
ttcaa |
40912758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 181 - 351
Target Start/End: Original strand, 7565127 - 7565297
Alignment:
| Q |
181 |
cgattaagaaagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
7565127 |
cgattaagaaagtgcttttggtaatgatataacaagggaggactgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaa |
7565226 |
T |
|
| Q |
281 |
gaacatgatttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7565227 |
gaacatgatttcgattttgaatggaagaattgaatttcaaatggatttcgattttgagatgaggaactcaa |
7565297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 32652242 - 32652369
Alignment:
| Q |
224 |
tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg |
323 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
32652242 |
tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattgaatttcaaatg |
32652341 |
T |
|
| Q |
324 |
gatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32652342 |
gatttcgattttgagatgaggaactcaa |
32652369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13007441 - 13007601
Alignment:
| Q |
16 |
ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007441 |
ctttgttctgaggcaagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacacgcgagaatttga |
13007540 |
T |
|
| Q |
116 |
aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaa |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
13007541 |
aagggaatcgaaatttcgttgtagtggtgatgatgggtaagtgcttttggtaatgatagaa |
13007601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 351
Target Start/End: Original strand, 13007579 - 13007740
Alignment:
| Q |
190 |
aagtgcttttggtaatgatagaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13007579 |
aagtgcttttggtaatgatagaacaagggaagagtgaatgatacgaaccgattcaacgcagaattgcatttcgatttcaaaccgcatggaagaacatgat |
13007678 |
T |
|
| Q |
290 |
ttcgattttgaatgaaagaattggatttcaaatggatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007679 |
ttcgattttgaatggaagaattggatttcaaatggatttcgattttgagatgaggaactcaa |
13007740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 48154854 - 48154727
Alignment:
| Q |
224 |
tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg |
323 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
48154854 |
tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgattttgattttgaatggaagaattggatttcaaatg |
48154755 |
T |
|
| Q |
324 |
gatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
48154754 |
gatttcgattttgagatgaggaactcaa |
48154727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 25441368 - 25441495
Alignment:
| Q |
224 |
tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg |
323 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25441368 |
tgaatgatacaaaccggttcaaagcggaattgcatttcgatttcaaactgcatggaagaacatgatttcgattttgaatggaagaattggatttcaaatg |
25441467 |
T |
|
| Q |
324 |
gatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25441468 |
gatttcgattttgagatgaggaactcaa |
25441495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 4488223 - 4488096
Alignment:
| Q |
224 |
tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg |
323 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
4488223 |
tgaatgatacgaaccggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgattttgattttgaatggaagaattggatttcaaatg |
4488124 |
T |
|
| Q |
324 |
gatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4488123 |
gatttcgattttgagatgaggaactcaa |
4488096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 26820093 - 26820000
Alignment:
| Q |
210 |
gaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatg |
303 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||||||| |||| |||||||||| ||||||||||| ||| ||| ||||||||||| |
|
|
| T |
26820093 |
gaacaagggaggagtgaatgatacaaactggttcaaagcggaattgtatttcgatttcaaaccgcatggaagaatatgtttttgattttgaatg |
26820000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 5915438 - 5915311
Alignment:
| Q |
224 |
tgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaattggatttcaaatg |
323 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5915438 |
tgaatgatacgaagcggttcaaagcggaattgcatttcgatttcaaaccgcatggaagaacatgatttcgattttgaatggaagaattggatttcaaatg |
5915339 |
T |
|
| Q |
324 |
gatttcgattttgagatgaggaactcaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5915338 |
gatttcgattttgagatgaggaactcaa |
5915311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 22722362 - 22722305
Alignment:
| Q |
214 |
aagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaac |
271 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| | ||||||| |||| ||||||||| |
|
|
| T |
22722362 |
aagggaggagtgaatgatatgaattggttcaaagtggaattggatttcaatttcaaac |
22722305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 44064221 - 44064056
Alignment:
| Q |
16 |
ctttgttctgaggcaagtcgactggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttga |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
44064221 |
ctttgttctgaggcaagtcgattggtaaacttgtgttgatcggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttga |
44064122 |
T |
|
| Q |
116 |
aagggaaacgaaatttcgttgtagtggtgatgatgggtaagtgattttggttatgatagaaaaagcgattaagaa |
190 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44064121 |
aaggggttcgaaatttcgt--------tgatg-tggggaagtgtttttggttatgatagaaaaagcgattaagaa |
44064056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 1873100 - 1873001
Alignment:
| Q |
210 |
gaacaagggaggagtgaatgatacgaatcggttcaaggcggaattgcatttggatttcaaactgcatggaagaacatgatttcgattttgaatgaaagaa |
309 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
1873100 |
gaacaagggaggagtgaatcatacgaactggttcaaagcggaattggatttcgatttcaaactgcatggaagaacatgttttcgattttgaatggaagaa |
1873001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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