View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5913_low_9 (Length: 360)
Name: NF5913_low_9
Description: NF5913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5913_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 42551745 - 42552089
Alignment:
| Q |
1 |
ttgaagagacaatatagacctcacctcacaatggcaatagccattcccttcttccagcaactcactggcatgaatgtgattacattttatgcccctgttt |
100 |
Q |
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| T |
42551745 |
ttgaagagacaatatagacctcacctcacaatggcaatagccattcccttcttccagcaactcactggcatgaatgtgattacattttatgcccctgttt |
42551844 |
T |
|
| Q |
101 |
tgtttaagactattggctttagtaacactgcttctctcgtgtcagccttaattattggaggttgtaatgcactcgccactcttgtttcaattgctactgt |
200 |
Q |
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| T |
42551845 |
tgtttaagactattggctttagtaacactgcttctctcgtgtcagccttaattattggaggttgtaatgcactcgccactcttgtttcaattgctactgt |
42551944 |
T |
|
| Q |
201 |
tgataaatttggaagaagaactcttttcattgaaggaggtattcaaatgttcatttgtcaggtttgtttaacaaaattatttgcaatacatacatacaca |
300 |
Q |
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| T |
42551945 |
tgataaatttggaagaagaactcttttcattgaaggaggtattcaaatgttcatttgtcaggtttgtttaacaaaattatttgcaatacatacatacaca |
42552044 |
T |
|
| Q |
301 |
ctatattgaactgtaaagtttacttgttactaattaaatttgaat |
345 |
Q |
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| T |
42552045 |
ctatattgaactgtaaagtttacttgttactaattaaatttgaat |
42552089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 42518298 - 42518048
Alignment:
| Q |
13 |
tatagacctcacctcacaatggcaatagccattcccttcttccagcaactcactggcatgaatgtgattacattttatgcccctgttttgtttaagacta |
112 |
Q |
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| T |
42518298 |
tataggcctcagcttaccatggccacagctattccattcttccagcaactcactggcatgaatgtcatcacattttatgctccggttttgtttaaaacta |
42518199 |
T |
|
| Q |
113 |
ttggctttagtaacactgcttctctcgtgtcagccttaattattggaggttgtaatgcactcgccactcttgtttcaattgctactgttgataaatttgg |
212 |
Q |
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| T |
42518198 |
tcggatttggtgctaatgcttcccttatgtcagccatgatcaccggaggctgcaatgcattagcaacgtttgcttcaattgccactgttgataagtttgg |
42518099 |
T |
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| Q |
213 |
aagaagaactcttttcattgaaggaggtattcaaatgttcatttgtcaggt |
263 |
Q |
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||| | ||||| ||| | |||||||| ||||||||| ||||||||||| |
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| T |
42518098 |
gagacgtactctattcttagaaggaggagctcaaatgtttatttgtcaggt |
42518048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 1239976 - 1239876
Alignment:
| Q |
13 |
tatagacctcacctcacaatggcaatagccattcccttcttccagcaactcactggcatgaatgtgattacattttatgcccctgttttgtttaagacta |
112 |
Q |
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| T |
1239976 |
tataggcctcaacttaccatggccatagctattccattattccagcaactcactggcatgaatgtcatcacattttatgctccagttttgtttaaaacta |
1239877 |
T |
|
| Q |
113 |
t |
113 |
Q |
| |
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| |
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| T |
1239876 |
t |
1239876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 18234452 - 18234198
Alignment:
| Q |
13 |
tatagacctcacctcacaatggcaatagccattcccttcttccagcaactcactggcatgaatgtgattacattttatgcccctgttttgtttaagacta |
112 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
18234452 |
tatagacctcatctcacaatggcaatagccattccgttctttcagcaactcaccggcatgaatgtgattacattctatgctcctgttttgttcaagacta |
18234353 |
T |
|
| Q |
113 |
ttggctttagtaacactgcttctctcgtgtcagccttaattattggaggttgtaatgcactcgccactcttgtttcaattgctactgttgataaatttgg |
212 |
Q |
| |
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|||| ||||| | || ||||||||| |||||||| | |||| ||||| ||||| ||||| |||||| | || ||||| || ||||||||||||||||| |
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| T |
18234352 |
ttgggtttagcagcaacgcttctctcatgtcagccctgattaccggaggatgtaacgcacttgccactttcgtatcaatcgccactgttgataaatttgg |
18234253 |
T |
|
| Q |
213 |
aagaagaactcttttcattgaaggaggtattcaaatgttcatttgtcaggtttgt |
267 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
18234252 |
aagaagaactcttttcatagaaggcggtattcaaatgtttatttgtcaggtttgt |
18234198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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