View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5914-Insertion-1 (Length: 420)

Name: NF5914-Insertion-1
Description: NF5914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5914-Insertion-1
NF5914-Insertion-1
[»] chr5 (1 HSPs)
chr5 (53-420)||(30360056-30360419)
[»] chr4 (10 HSPs)
chr4 (131-214)||(25180927-25181010)
chr4 (131-214)||(25047255-25047338)
chr4 (142-214)||(25169150-25169222)
chr4 (142-214)||(25252032-25252104)
chr4 (131-214)||(25160727-25160810)
chr4 (133-214)||(25018256-25018337)
chr4 (133-214)||(25039367-25039448)
chr4 (131-214)||(25000218-25000301)
chr4 (134-217)||(25189915-25189998)
chr4 (160-214)||(4600909-4600963)
[»] chr2 (4 HSPs)
chr2 (130-215)||(42289973-42290058)
chr2 (145-215)||(42157382-42157452)
chr2 (130-216)||(42167874-42167960)
chr2 (157-214)||(18803535-18803592)
[»] chr3 (1 HSPs)
chr3 (130-214)||(9213039-9213123)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 53 - 420
Target Start/End: Complemental strand, 30360419 - 30360056
Alignment:
Q  53 gattatatgtggatatagtttactatgactataataatttacttgatatatgcattgtttaaggatgggaaattatcaacttacttggtagtattctaga 152  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360419 gattaaatgtggatatagtttactatgactacaataatttacttgatatatgcattgtttaaggatgggaaattatcaacttacttggtagtattctaga 30360320  T
Q  153 ccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgtataaaacaaattttctataacataaaaataaaatac 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360319 ccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgtataaaacaaattttctataacataaaaataaaatac 30360220  T
Q  253 atcgatatattaaagaattttagtagaaaatccattgagtgaaacctaaagtaaaatttgtttgagacatttttgctttaagtgaaagttttaagtttaa 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360219 atcgatatattaaagaattttagtagaaaatccattgagtgaaacctaaagtaaaatttgtttgagacatttttgctttaagtgaaagttttaagtttaa 30360120  T
Q  353 ccactttgctaatgatatgtgaatcatacataccttgtaccgatgatacccgtcaatagagacatctc 420  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  30360119 ccactttgctaatgatatgtgaatc----ataccttgtaccgatgatacccgtcaatagagacatctc 30360056  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 25180927 - 25181010
Alignment:
Q  131 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25180927 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25181010  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 25047255 - 25047338
Alignment:
Q  131 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    ||||||||||||  | ||||||||| || ||||| |||||||| ||||| | |||||||||||||||||| |||||||||||||    
T  25047255 acttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 25047338  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 25169150 - 25169222
Alignment:
Q  142 agtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25169150 agtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25169222  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 25252104 - 25252032
Alignment:
Q  142 agtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25252104 agtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25252032  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 25160727 - 25160810
Alignment:
Q  131 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||||| | |||||||||||| || ||||| ||||| |||| |||||| |||||||  |||||||||  |||||||||||    
T  25160727 acttacttggcaatattctagaccaggatatggagaatctgtatgaatctaagttcatatctttcatgatcttaacatcttcct 25160810  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 25018256 - 25018337
Alignment:
Q  133 ttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||| | |||||| | ||| |||||||| ||||| |||||||||  ||||||||||||||||||  | ||||||||||    
T  25018256 ttacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcgacatcttcct 25018337  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 25039367 - 25039448
Alignment:
Q  133 ttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||| | |||||| | ||| |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||| ||||    
T  25039367 ttacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcctcct 25039448  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 25000301 - 25000218
Alignment:
Q  131 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    ||||||||||||| | ||||||||| || || || |||||||| ||||| | ||||| || ||||||||| |||| ||||||||    
T  25000301 acttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttcct 25000218  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 25189915 - 25189998
Alignment:
Q  134 tacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgta 217  Q
    ||||||| |||||||| ||||| ||||| || |||||||| | ||| | ||||  || |||||| |||||||||||||||||||    
T  25189915 tacttgggagtattcttgaccaagagattgagaatctatacgaatccatattctgatccttcataatcccaacatcttcctgta 25189998  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 4600909 - 4600963
Alignment:
Q  160 atggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    ||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  4600909 atggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 4600963  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 42290058 - 42289973
Alignment:
Q  130 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctg 215  Q
    |||| |||||| || ||||||||||| ||||| || ||||| || ||||| |||||||||| ||||||||| ||||||||||||||    
T  42290058 aactcacttgggaggattctagaccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcctg 42289973  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 42157382 - 42157452
Alignment:
Q  145 attctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctg 215  Q
    ||||||||||| ||||| || |||||||| ||||| |||||||||| | ||||||| ||||||||||||||    
T  42157382 attctagaccaagagattgagaatctataagcatccaaattcatattcctcatgatgccaacatcttcctg 42157452  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 42167874 - 42167960
Alignment:
Q  130 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgt 216  Q
    |||| |||||| || ||||  ||||| ||||| || ||||| || |||||||||||||||| | ||||||| |||||||||||||||    
T  42167874 aactcacttgggaggattcgggaccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcctgt 42167960  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 18803592 - 18803535
Alignment:
Q  157 gagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  18803592 gagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 18803535  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 9213123 - 9213039
Alignment:
Q  130 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 214  Q
    ||||||||||| | |||||||||||| || | ||| ||||| |||| ||| || ||||| | ||| ||||||| |||||||||||    
T  9213123 aacttacttggcaatattctagaccaggataaggagaatctgtatgaatccaagttcatgtccttgatgatcctaacatcttcct 9213039  T

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