View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5914-Insertion-2 (Length: 883)
Name: NF5914-Insertion-2
Description: NF5914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5914-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 721; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 9 - 871
Target Start/End: Original strand, 34261348 - 34262222
Alignment:
| Q |
9 |
ttaattagatccactgaactcttatttgtagaagacatgattcatagttcactt--------ttttaaaattttgaattgctttgaatgcaggttatttt |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34261348 |
ttaattagatccactgaacacttatttgtagaagacatgattcatagttcacttttgaacttttttaaaattttgaattgctttgaatgcaggttatttt |
34261447 |
T |
|
| Q |
101 |
ggctgctaatgacttaccttctatcaatgatgtaacttactctgagctaattgaaattatatcacaggtatcaaaaattcatttcaacaaatttttggta |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34261448 |
ggctgctaatgacttaccttctatcaatgatgtaacttactctgagctaattgaaattatatcacaggtatcaaaaattaatttcaacaaatttttggta |
34261547 |
T |
|
| Q |
201 |
taaccaaagttctttcctaactctgtcaagttggttaccagttaaaggatgaagaaggacgtctgttaggtgtcagcacttcaaatcttttgattgccaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261548 |
taaccaaagttctttcctaactctgtcaagttggttaccagttaaaggatgaagaaggacgtctgttaggtgtcagcacttcaaatcttttgattgccaa |
34261647 |
T |
|
| Q |
301 |
ctctggaagtgatttacctgtatgatttattttagaaacattttgtttgttaagttaggaaattctggtttctttatagtagtttatggcctgtactgtc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261648 |
ctctggaagtgatttacctgtatgatttattttagaaacattttgtttgttatgttaggaaattctggtttctttatagtagtttatggcctgtactgtc |
34261747 |
T |
|
| Q |
401 |
aaatcattgacttgtatgatgattaaataattgcatgtttctttgttgttttgttcaatgggttgcaggctattgatcttacaaaggtgtcacaagagct |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261748 |
aaatcattgacttgtatgatgattaaataattgcatgtttgtttgttgttttgttcaatgggttgcaggctattgatcttacaaaggtgtcacaagagct |
34261847 |
T |
|
| Q |
501 |
tgcttgccttgccactgatgtagatcttgtcattttagaaggaatggtataagttctttctttcacattgtatgttttttctcttggggttagacaatgt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34261848 |
tgcttgccttgccactgatgtagatcttgtcattttagaaggaatggtacaagttctttcttttacattgtatgttttttctcttggggttagacaatgt |
34261947 |
T |
|
| Q |
601 |
agcattcttctatttactcccttcgttccnnnnnnnnnnnnnnnggttcgaaatgttaaatgagtttggatatcatctctaaatgttaaatgaacatgtt |
700 |
Q |
| |
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| T |
34261948 |
agcattctcctatttactcccttcgttccttttttgttttttttggttcgaaatgttaaatgagtttggatatcatctctaaatgttaaatgaacatgtt |
34262047 |
T |
|
| Q |
701 |
aaaagaatgagggtgtccaaacacatttatacatccaacgatttgagaatttaaccaatgtagaactccaatataacttaaatatccaccttcataccta |
800 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
34262048 |
aaaagaatgagggtgtccaaacacttttatacatccaacgatttgagaatttaagcaatgtaggactccaatataacttaaatatccaccttcatgccta |
34262147 |
T |
|
| Q |
801 |
gcgtgaatcccaagtccaattttacattac-atccttcggctttcata-catg-ttaatg-acttgaatctcatt |
871 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
34262148 |
gcgtgaatcccaggtccaattttacattacaatccttcggctttcataccatgtttaatgaacttgaatctcatt |
34262222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 34251699 - 34252122
Alignment:
| Q |
9 |
ttaattagatccactgaactcttatttgtagaagacatgattcatagttcactttt--------ttaaaattttgaattgctttgaatgcaggttatttt |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||||||||||| || |||| || |||||| ||||||||||||||||||||| |||| |
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| T |
34251699 |
ttaattagattaactgaactcttgtttgtaaaagacatgattcatagtccatttttaaagttttttgaaatttcgaattgctttgaatgcaggttgtttt |
34251798 |
T |
|
| Q |
101 |
ggctgctaatgacttaccttctatcaatgatgtaacttactctgagctaattgaaattatatcacaggtatcaaaaattcatttcaacaaatttttggta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||| |
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|
| T |
34251799 |
ggctgctaatgacttaccttctatcaatgatgtgacttactctgagctaattgaaattatatcaaaggtaacaaaaatgaatttcaacaaatatttggta |
34251898 |
T |
|
| Q |
201 |
taaccaaagttctttcctaactctgtcaagttggttaccagttaaaggatgaagaaggacgtctgttaggtgtcagcacttcaaatcttttgattgccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |
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| T |
34251899 |
taaccaaagttctttcctaactctgtcaatttggttgccagttaaaggatgaagaaggacgtctcttgggtgtcagcacttcaaaacttttaattgccaa |
34251998 |
T |
|
| Q |
301 |
ctctggaagtgatttacctgtatgatttatttt--agaaacattttgtttgttaagttaggaaattctggtttctttatagtagtttatggcctgtactg |
398 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| |||||||||||||||| || ||||||||||||||||||| | |||||||||||| | ||| |
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|
| T |
34251999 |
ctctggaaatgatttacctgtaagatttttttttcagaaacattttgtttgctatattaggaaattctggtttct---tgttagtttatggccgatgctg |
34252095 |
T |
|
| Q |
399 |
tcaaatcattgacttgtatgatgatta |
425 |
Q |
| |
|
|||||| |||||||||||||||||||| |
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|
| T |
34252096 |
tcaaataattgacttgtatgatgatta |
34252122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 466 - 623
Target Start/End: Original strand, 34252140 - 34252298
Alignment:
| Q |
466 |
caggctattgatcttacaaaggtgtcacaagagcttgcttgccttgccactgatgtagatcttgtcattttagaaggaatggtataagttctttctttca |
565 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
34252140 |
caggttattgatcttacaaaggtgtcacaagagcttgcttcccttaccagtgatgtagatcttgtcattttagaagggatggtataagttctttcttaga |
34252239 |
T |
|
| Q |
566 |
cattgtatgttttttctctt-ggggttagacaatgtagcattcttctatttactccctt |
623 |
Q |
| |
|
||||||||| ||||||| || ||||||||| ||||| |||| | ||||||||||||| |
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|
| T |
34252240 |
cattgtatgctttttctattgggggttagatgatgtaacattttcatatttactccctt |
34252298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 82 - 322
Target Start/End: Complemental strand, 20861282 - 20861042
Alignment:
| Q |
82 |
tttgaatgcaggttattttggctgctaatgacttaccttctatcaatgatgtaacttactctgagctaattgaaattatatcacaggtatc-aaaaattc |
180 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||| || ||||||||||| || || ||||||||| |||||||||||||| ||||| | ||||| |
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| T |
20861282 |
tttgaatgcaggttgtattggctgcaaatgacttaccctcgatcaatgatgtgacgtattctgagctagttgaaattatatcaaaggtagcaaaaaaggg |
20861183 |
T |
|
| Q |
181 |
atttcaacaaatttttggtataaccaaagttctttcctaactctgtcaagttggttaccagttaaaggatgaagaaggacgtctgttaggtgtcagcact |
280 |
Q |
| |
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||| ||| ||| ||||| |||| | |||||| |||||| | ||| ||||||| |||||||||||||||||||||| || | |||||||| || |
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|
| T |
20861182 |
tttttcgtaaactttcggtattaccata-ttctttgctaactttatcaggttggtttccagttaaaggatgaagaaggaaaccttgtgggtgtcagtaca |
20861084 |
T |
|
| Q |
281 |
tcaaatcttttgattgccaactctggaagtgatttacctgta |
322 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||||||||||| |
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|
| T |
20861083 |
tcaaatcttctaattgccaactctggcaatgatttacctgta |
20861042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 752
Target Start/End: Original strand, 46913568 - 46913605
Alignment:
| Q |
715 |
gtccaaacacatttatacatccaacgatttgagaattt |
752 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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|
| T |
46913568 |
gtccaaacacatttatgcatccaacgatttgagaattt |
46913605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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