View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5914_high_1 (Length: 581)

Name: NF5914_high_1
Description: NF5914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5914_high_1
NF5914_high_1
[»] chr4 (4 HSPs)
chr4 (5-569)||(2886159-2886723)
chr4 (5-284)||(2897983-2898261)
chr4 (418-568)||(2897652-2897800)
chr4 (145-185)||(2876267-2876307)
[»] chr7 (8 HSPs)
chr7 (513-553)||(39337959-39337999)
chr7 (513-553)||(39349136-39349176)
chr7 (513-553)||(39564839-39564879)
chr7 (511-553)||(39575493-39575535)
chr7 (509-540)||(39589743-39589774)
chr7 (509-541)||(39365605-39365637)
chr7 (509-541)||(39538633-39538665)
chr7 (509-541)||(39547997-39548029)
[»] chr2 (3 HSPs)
chr2 (513-565)||(44211424-44211476)
chr2 (513-565)||(44223586-44223638)
chr2 (513-565)||(44234408-44234460)


Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 5 - 569
Target Start/End: Original strand, 2886159 - 2886723
Alignment:
Q  5 ttaacaggatttgtgtttcttttcaacatattattcactgtggctctcacttaccttgatcgtgagtaccttcgtttattgttatttaagtttcttatgc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886159 ttaacaggatttatgtttcttttcaacatattattcactgtggctctcacttaccttgatcgtgagtaccttcgtttattgttatttaagtttcttatgc 2886258  T
Q  105 ttatgcacacatttcattaactaacatgcatgatttttacagcatttgacaagccacaagcaacaataaatgaagaatcagaagacagcacaacaaatgg 204  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886259 ttatgcgcacatttcataaactaacatgcatgatttttacagcatttgacaagccacaagcaacaataaatgaagaatcagaagacagcacaacaaatgg 2886358  T
Q  205 cactacccaagaagttgaattaccgcgtataggtgatctatctttttcataccactcgtgaaaactcaatataaacatgctacttttatgtgtttgaact 304  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886359 cactacccaagaagttgaattaccacgtataggtgatctatctttttcataccactcgtgaaaactcaatataaacatgctacttttatgtgtttgaact 2886458  T
Q  305 agttcattagtgatttataatgcattttgattttatttaatattatttgggtgtagtcttgattattgttagggctgggatctcagttttctataatgat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886459 agttcattagtgatttataatgcattttgattttatttaatattatttgggtgtagtcttgattattgttagggctgggatctcagttttctataatgat 2886558  T
Q  405 gttctttcatgcctcataatggctttagaatcttaacatatttgcaattgttatgcagcaagttcaggaggatcaaatggtgcggaccccagccaaagag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2886559 gttctttcatgcctcataatggctttagaatcttaacatatttgcaattgttatgcagcaagttcaggaggatcaaatggtgcggaccctagccaaagag 2886658  T
Q  505 agagaagaggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtatattct 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886659 agagaagaggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtatattct 2886723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 2898261 - 2897983
Alignment:
Q  5 ttaacaggatttgtgtttcttttcaacatattattcactgtggctctcacttaccttgatcgtgagtaccttcgtttattgttatttaagtttcttatgc 104  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| ||| |||||||||||||||||     
T  2898261 ttaacaggatttatgtttcttttcaacatattattcactatggctctcactcaccttaatcgtgagtacattcattt-ttggtatttaagtttcttatgg 2898163  T
Q  105 ttatgcacacatttcattaactaacatgcatgatttttacagcatttgacaagccacaagcaacaataaatgaagaatcagaagacagcacaacaaatgg 204  Q
    ||||||| | ||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2898162 ttatgcaaatatgccattgactaacatgcatgatttttacagcatttgacaagccacaagcaaaaataaatgaagaatcagaagacagcataacaaatgg 2898063  T
Q  205 cactacccaagaagttgaattaccgcgtataggtgatctatctttttcataccactcgtgaaaactcaatataaacatgc 284  Q
    ||||  ||||||||||||||||||||| |||||| ||  ||||||||||||||| || ||||||||||||||||||||||    
T  2898062 cactctccaagaagttgaattaccgcgcataggttatgaatctttttcataccattcatgaaaactcaatataaacatgc 2897983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 568
Target Start/End: Complemental strand, 2897800 - 2897652
Alignment:
Q  418 tcataatggctttagaatcttaacata-tttgcaattgttatgcagcaagttcaggaggatcaaatggtgcggaccccagccaaagagagagaagaggaa 516  Q
    |||||||| |||||||||||||||| | ||| ||||||||| ||||| |||| ||||| ||   ||| || |  | ||||| | ||| ||| ||| ||||    
T  2897800 tcataatgtctttagaatcttaacaaaatttccaattgttacgcagctagtttaggagaat---atgttgtgagctccagcaacagaaagaaaaggggaa 2897704  T
Q  517 tggttcttccttttgaaccacattctatagcctttgacgatgttgtatattc 568  Q
    || ||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  2897703 tgattcttccttttgaaccacattctataatctttgaccaagttgtatattc 2897652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 2876267 - 2876307
Alignment:
Q  145 agcatttgacaagccacaagcaacaataaatgaagaatcag 185  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  2876267 agcacttgacaagccacaagccacaataaaagaagaatcag 2876307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 39337959 - 39337999
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttga 553  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  39337959 ggaatggttcttccttttgaaccacattctataacctttga 39337999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 39349136 - 39349176
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttga 553  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  39349136 ggaatggttcttccttttgaaccacattctataacctttga 39349176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 39564879 - 39564839
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttga 553  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  39564879 ggaatggttcttccttttgaaccacattctataacctttga 39564839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 39575535 - 39575493
Alignment:
Q  511 gaggaatggttcttccttttgaaccacattctatagcctttga 553  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  39575535 gaggaatggttcttccttttgaacaacattctataacctttga 39575493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 540
Target Start/End: Complemental strand, 39589774 - 39589743
Alignment:
Q  509 aagaggaatggttcttccttttgaaccacatt 540  Q
    ||||||||||||||||||||||||||||||||    
T  39589774 aagaggaatggttcttccttttgaaccacatt 39589743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Original strand, 39365605 - 39365637
Alignment:
Q  509 aagaggaatggttcttccttttgaaccacattc 541  Q
    |||||||||||||||||| ||||||||||||||    
T  39365605 aagaggaatggttcttccatttgaaccacattc 39365637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Complemental strand, 39538665 - 39538633
Alignment:
Q  509 aagaggaatggttcttccttttgaaccacattc 541  Q
    |||||||||||||||||| ||||||||||||||    
T  39538665 aagaggaatggttcttccatttgaaccacattc 39538633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Complemental strand, 39548029 - 39547997
Alignment:
Q  509 aagaggaatggttcttccttttgaaccacattc 541  Q
    ||||||||||||||| |||||||||||||||||    
T  39548029 aagaggaatggttctcccttttgaaccacattc 39547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 44211476 - 44211424
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtata 565  Q
    |||||||||||||| |||||||||||||||||  | ||||| ||| |||||||    
T  44211476 ggaatggttcttccatttgaaccacattctatcacttttgatgatattgtata 44211424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 44223638 - 44223586
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtata 565  Q
    |||||||||||||| |||||||||||||||||  | ||||| ||| |||||||    
T  44223638 ggaatggttcttccatttgaaccacattctatcacttttgatgatattgtata 44223586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 44234460 - 44234408
Alignment:
Q  513 ggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtata 565  Q
    |||||||||||||| |||||||||||||||||  | ||||| ||| |||||||    
T  44234460 ggaatggttcttccatttgaaccacattctatcacttttgatgatattgtata 44234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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