View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5914_low_2 (Length: 442)

Name: NF5914_low_2
Description: NF5914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5914_low_2
NF5914_low_2
[»] chr5 (1 HSPs)
chr5 (63-437)||(30360049-30360419)
[»] chr4 (10 HSPs)
chr4 (141-224)||(25180927-25181010)
chr4 (141-224)||(25047255-25047338)
chr4 (152-224)||(25169150-25169222)
chr4 (152-224)||(25252032-25252104)
chr4 (141-224)||(25160727-25160810)
chr4 (143-224)||(25018256-25018337)
chr4 (143-224)||(25039367-25039448)
chr4 (141-224)||(25000218-25000301)
chr4 (144-227)||(25189915-25189998)
chr4 (170-224)||(4600909-4600963)
[»] chr2 (4 HSPs)
chr2 (140-225)||(42289973-42290058)
chr2 (155-225)||(42157382-42157452)
chr2 (140-226)||(42167874-42167960)
chr2 (167-224)||(18803535-18803592)
[»] chr3 (1 HSPs)
chr3 (140-224)||(9213039-9213123)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 63 - 437
Target Start/End: Complemental strand, 30360419 - 30360049
Alignment:
Q  63 gattatatgtggatatagtttactatgactataataatttacttgatatatgcattgtttaaggatgggaaattatcaacttacttggtagtattctaga 162  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360419 gattaaatgtggatatagtttactatgactacaataatttacttgatatatgcattgtttaaggatgggaaattatcaacttacttggtagtattctaga 30360320  T
Q  163 ccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgtataaaacaaattttctataacataaaaataaaatac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360319 ccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgtataaaacaaattttctataacataaaaataaaatac 30360220  T
Q  263 atcgatatattaaagaattttagtagaaaatccattgagtgaaacctaaagtaaaatttgtttgagacatttttgctttaagtgaaagttttaagtttaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360219 atcgatatattaaagaattttagtagaaaatccattgagtgaaacctaaagtaaaatttgtttgagacatttttgctttaagtgaaagttttaagtttaa 30360120  T
Q  363 ccactttgctaatgatatgtgaatcatacataccttgtaccgatgatacccgtcaatagagacatctcctttgct 437  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||    
T  30360119 ccactttgctaatgatatgtgaatc----ataccttgtaccgatgatacccgtcaatagagacatctccattgct 30360049  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 25180927 - 25181010
Alignment:
Q  141 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25180927 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25181010  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 25047255 - 25047338
Alignment:
Q  141 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    ||||||||||||  | ||||||||| || ||||| |||||||| ||||| | |||||||||||||||||| |||||||||||||    
T  25047255 acttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 25047338  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 25169150 - 25169222
Alignment:
Q  152 agtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25169150 agtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25169222  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 25252104 - 25252032
Alignment:
Q  152 agtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  25252104 agtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25252032  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 25160727 - 25160810
Alignment:
Q  141 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||||| | |||||||||||| || ||||| ||||| |||| |||||| |||||||  |||||||||  |||||||||||    
T  25160727 acttacttggcaatattctagaccaggatatggagaatctgtatgaatctaagttcatatctttcatgatcttaacatcttcct 25160810  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 25018256 - 25018337
Alignment:
Q  143 ttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||| | |||||| | ||| |||||||| ||||| |||||||||  ||||||||||||||||||  | ||||||||||    
T  25018256 ttacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcgacatcttcct 25018337  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 25039367 - 25039448
Alignment:
Q  143 ttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||| | |||||| | ||| |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||| ||||    
T  25039367 ttacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcctcct 25039448  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 25000301 - 25000218
Alignment:
Q  141 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    ||||||||||||| | ||||||||| || || || |||||||| ||||| | ||||| || ||||||||| |||| ||||||||    
T  25000301 acttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttcct 25000218  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 25189915 - 25189998
Alignment:
Q  144 tacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgta 227  Q
    ||||||| |||||||| ||||| ||||| || |||||||| | ||| | ||||  || |||||| |||||||||||||||||||    
T  25189915 tacttgggagtattcttgaccaagagattgagaatctatacgaatccatattctgatccttcataatcccaacatcttcctgta 25189998  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 4600909 - 4600963
Alignment:
Q  170 atggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    ||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  4600909 atggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 4600963  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 42290058 - 42289973
Alignment:
Q  140 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctg 225  Q
    |||| |||||| || ||||||||||| ||||| || ||||| || ||||| |||||||||| ||||||||| ||||||||||||||    
T  42290058 aactcacttgggaggattctagaccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcctg 42289973  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 42157382 - 42157452
Alignment:
Q  155 attctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctg 225  Q
    ||||||||||| ||||| || |||||||| ||||| |||||||||| | ||||||| ||||||||||||||    
T  42157382 attctagaccaagagattgagaatctataagcatccaaattcatattcctcatgatgccaacatcttcctg 42157452  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 42167874 - 42167960
Alignment:
Q  140 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcctgt 226  Q
    |||| |||||| || ||||  ||||| ||||| || ||||| || |||||||||||||||| | ||||||| |||||||||||||||    
T  42167874 aactcacttgggaggattcgggaccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcctgt 42167960  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 18803592 - 18803535
Alignment:
Q  167 gagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  18803592 gagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 18803535  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 9213123 - 9213039
Alignment:
Q  140 aacttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 224  Q
    ||||||||||| | |||||||||||| || | ||| ||||| |||| ||| || ||||| | ||| ||||||| |||||||||||    
T  9213123 aacttacttggcaatattctagaccaggataaggagaatctgtatgaatccaagttcatgtccttgatgatcctaacatcttcct 9213039  T

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